Mercurial > repos > bgruening > text_processing
comparison cat.xml @ 2:616efa22d193 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 369e40078146d00608d52205bb8cee66ae735b76-dirty
author | bgruening |
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date | Tue, 30 Jun 2015 17:47:23 -0400 |
parents | 43b1f073b693 |
children | 37e1eb05b1b4 |
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1:43b1f073b693 | 2:616efa22d193 |
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9 ]]> | 9 ]]> |
10 </version_command> | 10 </version_command> |
11 <command> | 11 <command> |
12 <![CDATA[ | 12 <![CDATA[ |
13 cat | 13 cat |
14 #for $file in $inputs: | 14 #echo ' '.join(['"%s"' % $file for $file in $inputs])# |
15 "${file}" | 15 #for $q in $queries: |
16 #echo ' '.join(['"%s"' % $file for $file in $q.inputs2])# | |
16 #end for | 17 #end for |
17 > $out_file1 | 18 > $out_file1 |
18 ]]></command> | 19 ]]></command> |
19 <inputs> | 20 <inputs> |
20 <param name="inputs" multiple="true" type="data" format="txt" label="datasets to concatenate"/> | 21 <param name="inputs" multiple="true" type="data" format="txt" label="Datasets to concatenate"/> |
22 <repeat name="queries" title="Dataset"> | |
23 <param name="inputs2" type="data" multiple="True" label="Select" /> | |
24 </repeat> | |
21 </inputs> | 25 </inputs> |
22 <outputs> | 26 <outputs> |
23 <data name="out_file1" format_source="inputs" metadata_source="inputs"/> | 27 <data name="out_file1" format_source="inputs" metadata_source="inputs"/> |
24 </outputs> | 28 </outputs> |
25 <tests> | 29 <tests> |
26 <test> | 30 <test> |
27 <param name="inputs" value="sort_result1.bed,sort_result2.bed,sort_result3.bed"/> | 31 <param name="inputs" value="sort_result1.bed,sort_result2.bed,sort_result3.bed"/> |
28 <output name="out_file1" file="cat_result1.txt"/> | 32 <output name="out_file1" file="cat_result1.txt"/> |
33 </test> | |
34 <test> | |
35 <param name="inputs" value="sort_result1.bed,sort_result3.bed"/> | |
36 <repeat name="queries"> | |
37 <param name="inputs2" value="sort_result3.bed,sort_result3.bed"/> | |
38 </repeat> | |
39 <repeat name="queries"> | |
40 <param name="inputs2" value="sort_result3.bed"/> | |
41 </repeat> | |
42 <output name="out_file1" file="cat_result2.txt"/> | |
29 </test> | 43 </test> |
30 </tests> | 44 </tests> |
31 <help> | 45 <help> |
32 <![CDATA[ | 46 <![CDATA[ |
33 | 47 |