Mercurial > repos > bgruening > trim_galore
comparison test-data/sanger_full_range_report_results1gz.txt @ 10:b4e39d993fc8 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore commit bbef69cc08154b5c156c25f9ca43df0915803856
| author | bgruening |
|---|---|
| date | Thu, 20 Apr 2017 09:14:30 -0400 |
| parents | |
| children | 80cd83b11214 |
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| 9:1bfc7254232e | 10:b4e39d993fc8 |
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| 1 | |
| 2 SUMMARISING RUN PARAMETERS | |
| 3 ========================== | |
| 4 Input filename: input_1.fastq.gz | |
| 5 Trimming mode: single-end | |
| 6 Trim Galore version: 0.4.0 | |
| 7 Cutadapt version: 1.8 | |
| 8 Quality Phred score cutoff: 20 | |
| 9 Quality encoding type selected: ASCII+33 | |
| 10 Adapter sequence: 'AGATCGGAAGAGC' (Illumina TruSeq, Sanger iPCR; default (inconclusive auto-detection)) | |
| 11 Maximum trimming error rate: 0.1 (default) | |
| 12 Minimum required adapter overlap (stringency): 1 bp | |
| 13 Minimum required sequence length before a sequence gets removed: 20 bp | |
| 14 Output file will be GZIP compressed | |
| 15 | |
| 16 | |
| 17 This is cutadapt 1.8 with Python 3.5.3 | |
| 18 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC input_1.fastq.gz | |
| 19 Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ... | |
| 20 Finished in 0.10 s (50000 us/read; 0.00 M reads/minute). | |
| 21 | |
| 22 === Summary === | |
| 23 | |
| 24 Total reads processed: 2 | |
| 25 Reads with adapters: 1 (50.0%) | |
| 26 Reads written (passing filters): 2 (100.0%) | |
| 27 | |
| 28 Total basepairs processed: 188 bp | |
| 29 Quality-trimmed: 20 bp (10.6%) | |
| 30 Total written (filtered): 167 bp (88.8%) | |
| 31 | |
| 32 === Adapter 1 === | |
| 33 | |
| 34 Sequence: AGATCGGAAGAGC; Type: regular 3'; Length: 13; Trimmed: 1 times. | |
| 35 | |
| 36 No. of allowed errors: | |
| 37 0-9 bp: 0; 10-13 bp: 1 | |
| 38 | |
| 39 Bases preceding removed adapters: | |
| 40 A: 0.0% | |
| 41 C: 100.0% | |
| 42 G: 0.0% | |
| 43 T: 0.0% | |
| 44 none/other: 0.0% | |
| 45 | |
| 46 Overview of removed sequences | |
| 47 length count expect max.err error counts | |
| 48 1 1 0.5 0 1 | |
| 49 | |
| 50 | |
| 51 RUN STATISTICS FOR INPUT FILE: input_1.fastq.gz | |
| 52 ============================================= | |
| 53 2 sequences processed in total | |
| 54 Sequences removed because they became shorter than the length cutoff of 20 bp: 0 (0.0%) | |
| 55 |