changeset 7:8352713cf939 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore commit 07148c518916e16602ea26473d00358fe04bc3b6-dirty
author bgruening
date Mon, 25 Jan 2016 04:44:33 -0500
parents 11962ce40855
children f1e71aeaa923
files trim_galore.xml
diffstat 1 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/trim_galore.xml	Wed Oct 07 08:39:59 2015 -0400
+++ b/trim_galore.xml	Mon Jan 25 04:44:33 2016 -0500
@@ -1,4 +1,4 @@
-<tool id="trim_galore" name="Trim Galore!" version="0.4.0">
+<tool id="trim_galore" name="Trim Galore!" version="0.4.1">
     <!-- Wrapper compatible with Trim Galore! version 0.4 -->
     <description>adaptive quality and adapter trimmer</description>
     <macros>
@@ -11,7 +11,7 @@
                     <option value="--small_rna">Illumina small RNA adapters</option>
                     <option value="user">User defined adapter trimming</option>
                 </param>
-                <when value="auto"/>
+                <when value=""/>
                 <when value="--illumina"/>
                 <when value="--nextera"/>
                 <when value="--small_rna"/>
@@ -269,14 +269,14 @@
             <filter>singlePaired['sPaired'] == "paired"</filter>
         </data>
 
-        <data format="fastqsanger" name="unpaired_reads_1" from_work_dir="input_mate1_val_1.fq"
+        <data format="fastqsanger" name="unpaired_reads_1" from_work_dir="input_mate1_unpaired_1.fq"
             label="${tool.name} on ${on_string}: unpaired reads (1)">
             <filter>params['settingsType'] == "custom"</filter>
             <filter>params['retain_unpaired']['retain_unpaired_select'] == "retain_unpaired_output"</filter>
             <filter>singlePaired['sPaired'] == "paired"</filter>
         </data>
 
-        <data format="fastqsanger" name="unpaired_reads_2" from_work_dir="input_mate2_val_2.fq"
+        <data format="fastqsanger" name="unpaired_reads_2" from_work_dir="input_mate2_unpaired_2.fq"
             label="${tool.name} on ${on_string}: unpaired reads (2)">
             <filter>params['settingsType'] == "custom"</filter>
             <filter>params['retain_unpaired']['retain_unpaired_select'] == "retain_unpaired_output"</filter>
PK>評g2 webservice_toolsuite-d5cd409b8a18/.hg_archival.txtUTMPK>ٻgH webservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/DeleteTool1.py~UTMPK>\I webservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/DeleteTool1.xml~UTMPK>y"8H webservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/DeleteTool2.py~UTMPK>ɊuBD webservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/LICENSE.txtUTMPK>g^vBE webservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/LICENSE.txt~UTMPK>Z<Q webservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/ParserForWADL/.classpathUTMPK>tO owebservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/ParserForWADL/.projectUTMPK>ToJik webservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/ParserForWADL/.settings/org.eclipse.jdt.core.prefsUTMPK>XG b 4webservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/ParserForWADL/bin/lsdis/Application.classUTMPK>-(Z webservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/ParserForWADL/bin/lsdis/Doc.classUTMPK>>d^ @webservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/ParserForWADL/bin/lsdis/Grammar.classUTMPK>7Ɖr^ webservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/ParserForWADL/bin/lsdis/Include.classUTMPK>B9m[ webservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/ParserForWADL/bin/lsdis/Link.classUTMPK>Jid ] webservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/ParserForWADL/bin/lsdis/Method.classUTMPK>K] $webservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/ParserForWADL/bin/lsdis/Option.classUTMPK>"P`3\ |'webservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/ParserForWADL/bin/lsdis/Param.classUTMPK>~A.; e o-webservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/ParserForWADL/bin/lsdis/Representation.classUTMPK>3br^ 1webservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/ParserForWADL/bin/lsdis/Request.classUTMPK>/L8 _ 4webservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/ParserForWADL/bin/lsdis/Resource.classUTMPK>Mp*` 9webservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/ParserForWADL/bin/lsdis/Resources.classUTMPK>1 _ <webservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/ParserForWADL/bin/lsdis/Response.classUTMPK>r+c @webservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/ParserForWADL/bin/lsdis/WADLConstant.classUTMPK>"@4a Dwebservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/ParserForWADL/bin/lsdis/WADLParser.classUTMPK>ѻ* g Zwebservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/ParserForWADL/bin/lsdis/WADLParserDriver.classUTMPK>B a V gwebservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/ParserForWADL/bin/trial.classUTMPK>Eި f swebservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/ParserForWADL/bin/trialWADLParserDriver.classUTMPK>J ]ŝlY ~webservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/ParserForWADL/lib/JdomParser.jarUTMPK>fcvT ,webservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/ParserForWADL/lib/jaxen.jarUTMPK>z$3R \V O&webservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/ParserForWADL/lib/saxpath.jarUTMPK>6MfT ywebservice_toolsuite-d5cd409b8a18/WebServiceToolWorkflow/ParserForWADL/lib/xalan.jarUTMPK