annotate tool_dependencies.xml @ 12:07d323c7b047 draft

Uploaded
author big-tiandm
date Fri, 14 Nov 2014 21:24:13 -0500
parents bd59a7d791b5
children 96961ac4f745
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4
5d8069b349e5 Uploaded
big-tiandm
parents:
diff changeset
1 <?xml version="1.0"?>
5d8069b349e5 Uploaded
big-tiandm
parents:
diff changeset
2 <tool_dependency>
5d8069b349e5 Uploaded
big-tiandm
parents:
diff changeset
3 <set_environment version="1.0">
5d8069b349e5 Uploaded
big-tiandm
parents:
diff changeset
4 <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
5d8069b349e5 Uploaded
big-tiandm
parents:
diff changeset
5 </set_environment>
5d8069b349e5 Uploaded
big-tiandm
parents:
diff changeset
6
10
8211c40fcb3c Uploaded
big-tiandm
parents: 6
diff changeset
7 <!--package name="R" version="3.0.1">
6
2cdd651b4d01 Uploaded
big-tiandm
parents: 4
diff changeset
8 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
4
5d8069b349e5 Uploaded
big-tiandm
parents:
diff changeset
9 </package>
5d8069b349e5 Uploaded
big-tiandm
parents:
diff changeset
10
5d8069b349e5 Uploaded
big-tiandm
parents:
diff changeset
11 <package name="degseq" version="1.20.0">
5d8069b349e5 Uploaded
big-tiandm
parents:
diff changeset
12 <install version="1.0">
5d8069b349e5 Uploaded
big-tiandm
parents:
diff changeset
13 <actions>
5d8069b349e5 Uploaded
big-tiandm
parents:
diff changeset
14 <action type="set_environment_for_install">
6
2cdd651b4d01 Uploaded
big-tiandm
parents: 4
diff changeset
15 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
2cdd651b4d01 Uploaded
big-tiandm
parents: 4
diff changeset
16 <package name="R" version="3.0.1" />
4
5d8069b349e5 Uploaded
big-tiandm
parents:
diff changeset
17 </repository>
5d8069b349e5 Uploaded
big-tiandm
parents:
diff changeset
18 </action>
5d8069b349e5 Uploaded
big-tiandm
parents:
diff changeset
19 <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action>
5d8069b349e5 Uploaded
big-tiandm
parents:
diff changeset
20 </actions>
5d8069b349e5 Uploaded
big-tiandm
parents:
diff changeset
21 </install>
5d8069b349e5 Uploaded
big-tiandm
parents:
diff changeset
22
5d8069b349e5 Uploaded
big-tiandm
parents:
diff changeset
23
10
8211c40fcb3c Uploaded
big-tiandm
parents: 6
diff changeset
24 </package!-->
8211c40fcb3c Uploaded
big-tiandm
parents: 6
diff changeset
25
8211c40fcb3c Uploaded
big-tiandm
parents: 6
diff changeset
26
8211c40fcb3c Uploaded
big-tiandm
parents: 6
diff changeset
27 <package name="R" version="3.0.1">
11
bd59a7d791b5 Uploaded
big-tiandm
parents: 10
diff changeset
28 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"/>
bd59a7d791b5 Uploaded
big-tiandm
parents: 10
diff changeset
29
10
8211c40fcb3c Uploaded
big-tiandm
parents: 6
diff changeset
30 <install version="1.0">
8211c40fcb3c Uploaded
big-tiandm
parents: 6
diff changeset
31 <actions>
8211c40fcb3c Uploaded
big-tiandm
parents: 6
diff changeset
32 <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action>
8211c40fcb3c Uploaded
big-tiandm
parents: 6
diff changeset
33 </actions>
8211c40fcb3c Uploaded
big-tiandm
parents: 6
diff changeset
34 </install>
8211c40fcb3c Uploaded
big-tiandm
parents: 6
diff changeset
35
8211c40fcb3c Uploaded
big-tiandm
parents: 6
diff changeset
36
4
5d8069b349e5 Uploaded
big-tiandm
parents:
diff changeset
37 </package>
5d8069b349e5 Uploaded
big-tiandm
parents:
diff changeset
38
5d8069b349e5 Uploaded
big-tiandm
parents:
diff changeset
39
5d8069b349e5 Uploaded
big-tiandm
parents:
diff changeset
40 </tool_dependency>