Mercurial > repos > big-tiandm > degseq
comparison tool_dependencies.xml @ 14:e10ada1be34d draft
Uploaded
| author | big-tiandm |
|---|---|
| date | Fri, 14 Nov 2014 23:01:13 -0500 |
| parents | 96961ac4f745 |
| children | 1f49db503877 |
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| 13:96961ac4f745 | 14:e10ada1be34d |
|---|---|
| 3 <set_environment version="1.0"> | 3 <set_environment version="1.0"> |
| 4 <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable> | 4 <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable> |
| 5 </set_environment> | 5 </set_environment> |
| 6 | 6 |
| 7 <package name="R" version="3.0.1"> | 7 <package name="R" version="3.0.1"> |
| 8 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" /> | 8 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" prior_installation_required="True"/> |
| 9 </package> | 9 </package> |
| 10 | 10 |
| 11 <package name="degseq" version="1.20.0"> | 11 <package name="degseq" version="1.20.0"> |
| 12 <install version="1.0"> | 12 <install version="1.0"> |
| 13 <actions> | 13 <actions> |
| 14 <action type="set_environment_for_install"> | 14 <action type="set_environment_for_install"> |
| 15 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> | 15 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" prior_installation_required="True"> |
| 16 <package name="R" version="3.0.1" /> | 16 <package name="R" version="3.0.1" /> |
| 17 </repository> | 17 </repository> |
| 18 </action> | 18 </action> |
| 19 <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action> | 19 <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action> |
| 20 | |
| 21 <action type="shell_command">RPATH=`which R` </action> | |
| 22 | |
| 23 <action type="set_environment"> | |
| 24 <environment_variable name="PATH" action="prepend_to">$RPATH</environment_variable> | |
| 25 </action> | |
| 26 | |
| 20 </actions> | 27 </actions> |
| 21 </install> | 28 </install> |
| 22 | 29 |
| 23 | 30 |
| 24 </package> | 31 </package> |