Mercurial > repos > big-tiandm > mirplant2
comparison preProcess.xml @ 52:8b8c356e6db5 draft
Uploaded
| author | big-tiandm |
|---|---|
| date | Fri, 05 Dec 2014 01:28:46 -0500 |
| parents | 7b5a48b972e9 |
| children |
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| 51:3202911efdae | 52:8b8c356e6db5 |
|---|---|
| 99 <option value="yes" selected="true">yes</option> | 99 <option value="yes" selected="true">yes</option> |
| 100 <option value="no">no</option> | 100 <option value="no">no</option> |
| 101 </param> | 101 </param> |
| 102 <when value="yes"> | 102 <when value="yes"> |
| 103 <!--param name="rfam" type="data" label="rfam sequence file" /--> | 103 <!--param name="rfam" type="data" label="rfam sequence file" /--> |
| 104 <when value="yes"> | |
| 105 <!--param name="rfam" type="data" label="rfam sequence file" /--> | |
| 106 <conditional name="reference_rfam"> | 104 <conditional name="reference_rfam"> |
| 107 <param name="source" type="select" label="Will you select a reference genome from your history or use a built-in index?" help="Built-ins were indexed using default options"> | 105 <param name="source" type="select" label="Will you select a reference genome from your history or use a built-in index?" help="Built-ins were indexed using default options"> |
| 108 <option value="indexed">Use a built-in index</option> | 106 <option value="indexed">Use a built-in index</option> |
| 109 <option value="history">Use one from the history</option> | 107 <option value="history">Use one from the history</option> |
| 110 </param> | 108 </param> |
| 121 </when> | 119 </when> |
| 122 </conditional> | 120 </conditional> |
| 123 | 121 |
| 124 <param name="v" type="integer" value="0" label="report end-to-end hits less than v mismatches for rfam mapping"/> | 122 <param name="v" type="integer" value="0" label="report end-to-end hits less than v mismatches for rfam mapping"/> |
| 125 </when> | 123 </when> |
| 126 </conditional> <!-- params --> | 124 </conditional> |
| 125 | |
| 126 | |
| 127 | 127 |
| 128 </inputs> | 128 </inputs> |
| 129 | 129 |
| 130 <outputs> | 130 <outputs> |
| 131 <data format="html" name="preprocess result" from_work_dir="preProcess/preprocessResult.html" label="${tool.name} on ${on_string}: preprocess result"/> | 131 <data format="html" name="preprocess result" from_work_dir="preProcess/preprocessResult.html" label="${tool.name} on ${on_string}: preprocess result"/> |