Mercurial > repos > big-tiandm > mirplant2
diff matching.pl @ 44:0c4e11018934 draft
Uploaded
| author | big-tiandm |
|---|---|
| date | Thu, 30 Oct 2014 21:29:19 -0400 |
| parents | 7321a6f82492 |
| children | c75593f79aa9 |
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--- a/matching.pl Tue Oct 28 01:35:32 2014 -0400 +++ b/matching.pl Thu Oct 30 21:29:19 2014 -0400 @@ -44,7 +44,7 @@ } ### genome mapping -`bowtie -v $mis -f -p $threads -m $hits -a --best --strata $index $filein --al genome_mapped.fa --un genome_not_mapped.fa --max genome_mapped_Mlimit.fa > genome_mapped.bwt`; +`bowtie -v $mis -f -p $threads -m $hits -a --best --strata $index $filein --al genome_mapped.fa --un genome_not_mapped.fa --max genome_mapped_Mlimit.fa > genome_mapped.bwt 2> run.log`; #`convert_bowtie_to_blast.pl genome_mapped.bwt genome_mapped.fa $genome > genome_mapped.bst`;