Mercurial > repos > big-tiandm > mirplant2

changeset 40:6a273db77b9b draft

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Uploaded
author big-tiandm
date Tue, 28 Oct 2014 01:33:03 -0400
parents 2a5b751228a6
children 58b9d9a0d832
files miRPlant.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/miRPlant.xml	Tue Oct 28 01:32:32 2014 -0400
+++ b/miRPlant.xml	Tue Oct 28 01:33:03 2014 -0400
@@ -6,7 +6,8 @@
     <requirement type="package" version="0.12.7">bowtie</requirement>
     <requirement type="package" version="2.11.0">R</requirement>
 	<requirement type="package" version="0.0.13">fastx_toolkit </requirement>
-	<requirement type="package" version="2.1.7">ViennaRNA</requirement>
+	<requirement type="package" version="1.5.0">X11</requirement>
+	<requirement type="package" version="2.1.8">ViennaRNA</requirement>
   </requirements>
 
   <!--command interpreter="perl">miPlant.pl -i $input -format $format -gfa $gfa -idx $index -pre $pre -mat $mat -rfam $rfam -idx2 $idx2 -D $D -a $a -M $M -min $min -max $max -mis $mis -e $e -f $f -v $v -r $r -dis $dis -flank $flank -mfe $mfe -t $t -o $output</command-->
@@ -68,7 +69,6 @@
 	<param name="dis" type="integer" value="200" label="Maximal space between miRNA and miRNA*" />
 	<param name="flank" type="integer" value="10" label="Flank sequence length of miRNA precursor" />
 	<param name="mfe" type="float" value="-30" label="Maximal free energy allowed for a miRNA precursor" />
-	<param name="thread" type="integer" value="1" label="number of threads" />
   </inputs>
 
   <outputs>