Mercurial > repos > bimib > cobraxy
changeset 536:55fdc97cd95a draft
Uploaded
| author | francesco_lapi |
|---|---|
| date | Sat, 25 Oct 2025 11:02:15 +0000 |
| parents | 3266da9d0404 |
| children | f79250e824b5 |
| files | COBRAxy/metabolicModel2Tabular.xml |
| diffstat | 1 files changed, 23 insertions(+), 15 deletions(-) [+] |
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--- a/COBRAxy/metabolicModel2Tabular.xml Sat Oct 25 10:57:10 2025 +0000 +++ b/COBRAxy/metabolicModel2Tabular.xml Sat Oct 25 11:02:15 2025 +0000 @@ -17,17 +17,20 @@ --tool_dir $__tool_directory__ --medium_selector $cond_model.cond_medium.medium_selector #if $cond_model.model_selector == 'Custom_model' - --input $cond_model.input - --name $cond_model.input.element_identifier + --input "$cond_model.input" + --name "$cond_model.input.element_identifier" + --out_tabular "$out_tabular_custom" + #elif $cond_model.model_selector == 'ENGRO2' + --model "$cond_model.model_selector" + --name "$cond_model.model_selector" + --out_tabular "$out_tabular_engro2" #else - --model $cond_model.model_selector - --name $cond_model.model_selector + --model "$cond_model.model_selector" + --name "$cond_model.model_selector" + --out_tabular "$out_tabular_recon" #end if - - --gene_format $cond_model.gene_format - - --out_log $log - --out_tabular $out_tabular + --gene_format "$cond_model.gene_format" + --out_log "$log" ]]> </command> <inputs> @@ -93,13 +96,18 @@ <outputs> <data name="log" format="txt" label="MetabolicModelSetting - Log" /> - <data name="out_tabular" format="tabular" - label="#if $cond_model.model_selector == 'Custom_model' - ${cond_model.input.element_identifier}_model_tabular - #else - ${cond_model.model_selector}_model_tabular - #end if"/> + + <data name="out_tabular_engro2" format="tabular" label="ENGRO2_model_tabular"> + <filter>cond_model['model_selector'] == 'ENGRO2'</filter> + </data> + + <data name="out_tabular_recon" format="tabular" label="Recon_model_tabular"> + <filter>cond_model['model_selector'] == 'Recon'</filter> + </data> + <data name="out_tabular_custom" format="tabular" label="Custom_model_tabular"> + <filter>cond_model['model_selector'] == 'Custom_model'</filter> + </data> </outputs> <help>