Mercurial > repos > bimib > cobraxy

changeset 409:71850bdf9e1e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author francesco_lapi
date Mon, 08 Sep 2025 17:18:08 +0000
parents f413b78d61bf
children d660c5b03c14
files COBRAxy/utils/general_utils.py
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/COBRAxy/utils/general_utils.py	Mon Sep 08 17:12:35 2025 +0000
+++ b/COBRAxy/utils/general_utils.py	Mon Sep 08 17:18:08 2025 +0000
@@ -11,7 +11,7 @@
 
 import pandas as pd
 import cobra
-from cobra import Model, Reaction, Metabolite
+from cobra import Model as cobraModel, Reaction, Metabolite
 
 import zipfile
 import gzip
@@ -717,7 +717,7 @@
     return model2
 
 
-def build_cobra_model_from_csv(csv_path: str, model_id: str = "ENGRO2_custom") -> cobra.Model:
+def build_cobra_model_from_csv(csv_path: str, model_id: str = "new_model") -> cobra.Model:
     """
     Costruisce un modello COBRApy a partire da un file CSV con i dati delle reazioni.
     
@@ -733,7 +733,7 @@
     df = pd.read_csv(csv_path, sep='\t')
     
     # Crea il modello vuoto
-    model = Model(model_id)
+    model = cobraModel(model_id)
     
     # Dict per tenere traccia di metaboliti e compartimenti
     metabolites_dict = {}