Mercurial > repos > bimib > cobraxy
changeset 421:f9fe44c65772 draft
Uploaded
| author | francesco_lapi |
|---|---|
| date | Tue, 09 Sep 2025 09:30:41 +0000 |
| parents | 0877682fff48 |
| children | 27c5a67f1ee6 |
| files | COBRAxy/flux_simulation_beta.py |
| diffstat | 1 files changed, 9 insertions(+), 3 deletions(-) [+] |
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--- a/COBRAxy/flux_simulation_beta.py Tue Sep 09 09:12:01 2025 +0000 +++ b/COBRAxy/flux_simulation_beta.py Tue Sep 09 09:30:41 2025 +0000 @@ -407,13 +407,19 @@ #ARGS.output_type_analysis = ARGS.output_type_analysis.split(",") # --- Normalize inputs (the tool may pass comma-separated --input and either --name or --names) --- - ARGS.input_files = ARGS.input.split(",") if getattr(ARGS, "input", None) else [] + ARGS.input_files = ARGS.input.split(",") if ARGS.input else [] ARGS.file_names = ARGS.name.split(",") # output types (required) -> list - ARGS.output_types = ARGS.output_type.split(",") if getattr(ARGS, "output_type", None) else [] + ARGS.output_types = ARGS.output_type.split(",") if ARGS.output_type else [] # optional analysis output types -> list or empty - ARGS.output_type_analysis = ARGS.output_type_analysis.split(",") if getattr(ARGS, "output_type_analysis", None) else [] + ARGS.output_type_analysis = ARGS.output_type_analysis.split(",") if ARGS.output_type_analysis else [] + print("=== INPUT FILES ===") + print(ARGS.input_files) + print(ARGS.file_names) + print(ARGS.output_type) + print(ARGS.output_types) + print(ARGS.output_type_analysis) if ARGS.model_and_bounds == "True": # MODE 1: Model + bounds (separate files)