Mercurial > repos > bimib > marea_2
changeset 199:2dbc0842124b draft
Uploaded
| author | francesco_lapi |
|---|---|
| date | Wed, 31 Jul 2024 14:42:46 +0000 |
| parents | cb0df5dfc742 |
| children | dd6a87e0ab1b |
| files | marea_2/flux_to_map.py |
| diffstat | 1 files changed, 6 insertions(+), 4 deletions(-) [+] |
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--- a/marea_2/flux_to_map.py Wed Jul 31 14:38:11 2024 +0000 +++ b/marea_2/flux_to_map.py Wed Jul 31 14:42:46 2024 +0000 @@ -878,9 +878,9 @@ # getMap will None-check the customPath and panic when the model IS custom but there's no file (good). A cleaner # solution can be derived from my comment in FilePath.fromStrPath - if ARGS.using_RAS: - ids, class_pat = getClassesAndIdsFromDatasets(ARGS.input_datas, ARGS.input_data, ARGS.input_class, ARGS.names) - computeEnrichment(core_map, class_pat, ids) + #if ARGS.using_RAS: + # ids, class_pat = getClassesAndIdsFromDatasets(ARGS.input_datas, ARGS.input_data, ARGS.input_class, ARGS.names) + # computeEnrichment(core_map, class_pat, ids) if ARGS.using_RPS: ids, class_pat = getClassesAndIdsFromDatasets(ARGS.input_datas_rps, ARGS.input_data_rps, ARGS.input_class_rps, ARGS.names_rps) @@ -889,15 +889,17 @@ # create output files: TODO: this is the same comparison happening in "maps", find a better way to organize this if ARGS.comparison == "manyvsmany": for i, j in it.combinations(class_pat.keys(), 2): createOutputMaps(i, j, core_map) + print('Execution succeded') return if ARGS.comparison == "onevsrest": for single_cluster in class_pat.keys(): createOutputMaps(single_cluster, "rest", core_map) + print('Execution succeded') return for otherDataset in class_pat.keys(): if otherDataset != ARGS.control: createOutputMaps(i, j, core_map) - print('Execution succeded') + if not ERRORS: return utils.logWarning( f"The following reaction IDs were mentioned in the dataset but weren't found in the map: {ERRORS}",