Mercurial > repos > bimib > marea_2
changeset 93:699cb55d47ad draft
Uploaded
| author | luca_milaz |
|---|---|
| date | Sat, 20 Jul 2024 16:14:10 +0000 |
| parents | 043d917bd44c |
| children | 92a917341483 |
| files | marea_2/local/svg metabolic maps/models/svg metabolic maps/ENGRO2_map.svg marea_2/local/svg metabolic maps/models/svg metabolic maps/HMRcore_map.svg marea_2/local/svg metabolic maps/svg metabolic maps/ENGRO2_map.svg marea_2/local/svg metabolic maps/svg metabolic maps/HMRcore_map.svg |
| diffstat | 4 files changed, 0 insertions(+), 21612 deletions(-) [+] |
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--- a/marea_2/local/svg metabolic maps/models/svg metabolic maps/ENGRO2_map.svg Sat Jul 20 16:12:20 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,3104 +0,0 @@ -<svg width="2632" height="2473" viewBox="0 0 2632 2473" fill="none" xmlns="http://www.w3.org/2000/svg"> -<rect width="2632" height="2473" fill="#F5F5F5"/> -<g id="ENGRO2_2"> -<g id="Legend"> -<text id="text52" fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="24" font-weight="bold" letter-spacing="0em"><tspan x="98.4258" y="2467.32">Thickness is proportional to fold change</tspan></text> -<g id="Legend Body"> -<g id="Frame 1"> -<g id="Group 176"> -<text id="text35" fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="24" font-weight="bold" letter-spacing="0em"><tspan x="220.246" y="2350.32">= Up regulated</tspan></text> -<path id="path6613-8-6" d="M98 2342H210" stroke="#E41A1C" stroke-width="30"/> -</g> -<g id="Group 179"> -<text id="text35_2" fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="24" font-weight="bold" letter-spacing="0em"><tspan x="683.168" y="2350.32">= Up regulated (conflicting data)</tspan></text> -<path id="path6613-8-6_2" d="M558 2342H670" stroke="#FF7A00" stroke-width="30"/> -</g> -<g id="Group 177"> -<path id="path6613-8-2-6" d="M1221 2342H1333" stroke="#BEBEBE" stroke-width="30" stroke-dasharray="30 30"/> -<text id="text48" fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="24" font-weight="bold" letter-spacing="0em"><tspan x="1345.25" y="2350.32">= Not significant</tspan></text> -</g> -<g id="Group 178"> -<g id="path6613-8-4-9"> -<path d="M1703 2342H1815H1703Z" fill="black"/> -<path d="M1703 2342H1815" stroke="black" stroke-width="30"/> -</g> -<text id="text46" fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="24" font-weight="bold" letter-spacing="0em"><tspan x="1830.06" y="2350.32">= Not classified</tspan></text> -</g> -</g> -<g id="Frame 2"> -<g id="Group 179_2"> -<text id="text37" fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="24" font-weight="bold" letter-spacing="0em"><tspan x="220.07" y="2408.32">= Down regulated</tspan></text> -<path id="path6613-3" d="M98 2400H210" stroke="#0000FF" stroke-width="30"/> -</g> -<g id="Group 181"> -<text id="text37_2" fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="24" font-weight="bold" letter-spacing="0em"><tspan x="683.492" y="2408.32">= Down regulated (conflicting data)</tspan></text> -<path id="path6613-3_2" d="M558 2400H670" stroke="#B22CF1" stroke-width="30"/> -</g> -<g id="Group 180"> -<path id="path6613-8-1-0" d="M1222 2400H1334" stroke="#BEBEBE" stroke-width="30"/> -<text id="text50" fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="24" font-weight="bold" letter-spacing="0em"><tspan x="1346.16" y="2408.32">= Fold change under threshold</tspan></text> -</g> -</g> -</g> -<text id="Legend_2" fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="32" font-weight="bold" letter-spacing="0em"><tspan x="98.2344" y="2289.59">Legend:</tspan></text> -</g> -<g id="Group 141"> -<g id="R_t_Lcystin_leu__L"> -<path fill-rule="evenodd" clip-rule="evenodd" d="M88.3713 1562.09C95.8175 1560.25 94.2335 1545 94.2335 1545L88.3713 1562.09ZM46.0479 1563H121.048H46.0479ZM60.5692 1545.18C57.3908 1555.96 66.5926 1562.31 66.5926 1562.31L60.5692 1545.18Z" fill="#2B0000"/> -<path d="M88.3713 1562.09C95.8175 1560.25 94.2335 1545 94.2335 1545M46.0478 1563H121.048M60.5692 1545.18C57.3908 1555.96 66.5926 1562.31 66.5926 1562.31" stroke="black" stroke-width="1.48938"/> -</g> -<path id="F_t_Lcystin_leu__L" d="M112.236 1566.59C121.998 1563.81 121.998 1563.81 121.998 1563.81L112.293 1560.84L114.698 1563.74L112.236 1566.59ZM63.0479 1548.02C60.8317 1541.13 60.8317 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y="347.514">Arg</tspan></text> -<g id="R_arg_L_t"> -<path fill-rule="evenodd" clip-rule="evenodd" d="M2546.28 342H2624.28H2546.28Z" fill="#2B0000"/> -<path d="M2546.28 342H2624.28" stroke="black" stroke-width="2.52196"/> -</g> -<path id="B_arg_L_t" fill-rule="evenodd" clip-rule="evenodd" d="M2544.78 342.258L2547.19 339.294L2537.54 342.258L2547.19 345.221L2544.78 342.258Z" fill="#2B0000" stroke="black" stroke-width="2.32327"/> -<text id="text5553" fill="#2B0000" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="16" font-weight="bold" letter-spacing="0em"><tspan x="2501.01" y="551.864">Glu</tspan></text> -<g id="R_glu_L_t"> -<path fill-rule="evenodd" clip-rule="evenodd" d="M2618.28 547.569H2543.28H2618.28Z" fill="#2B0000"/> -<path d="M2618.28 547.569H2543.28" stroke="black" stroke-width="2.25149"/> -</g> -<g id="R_ser_L_t"> -<path fill-rule="evenodd" clip-rule="evenodd" d="M2621.56 574.569H2541.78H2621.56Z" fill="#2B0000"/> -<path d="M2621.56 574.569H2541.78" 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font-weight="bold" letter-spacing="0em"><tspan x="0" y="18.4336">Glycolysis / Gluconeogenesis</tspan></text> -<circle id="Ellipse 1_10" cx="6" cy="6" r="6" transform="matrix(0 1 1 0 98 392)" fill="#DA8F38"/> -</g> -<g id="Group 84"> -<text id="text7967-0-3-6-2-7-4-34-4-5" fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="16" font-weight="bold" letter-spacing="0em"><tspan x="708.039" y="759.547">Ala</tspan></text> -<text id="text7967-0-3-65-1-3-2-82-8-6" fill="black" xml:space="preserve" style="white-space: pre" font-family="Inter" font-size="12" letter-spacing="0em"><tspan x="639.277" y="821.864">AKG</tspan></text> -<text id="text7967-0-3-65-1-3-2-5-0-5-4" fill="black" xml:space="preserve" style="white-space: pre" font-family="Inter" font-size="12" letter-spacing="0em"><tspan x="613.131" y="828.864">Glu</tspan></text> -<path id="F_ALATA_L" fill-rule="evenodd" clip-rule="evenodd" d="M655 831.5L650.5 826.5L647.5 831.5L650.796 828.632L655 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letter-spacing="0em"><tspan x="2267.16" y="2138.55">GSH</tspan></text> -<path id="F_GTHPi" d="M2172.55 2133.74C2162.88 2130.64 2162.88 2130.64 2162.88 2130.64L2172.68 2127.99L2170.18 2130.81L2172.55 2133.74ZM2181.63 2122.18C2184.48 2115.61 2184.48 2115.61 2184.48 2115.61L2187.15 2122.22L2184.41 2120.55L2181.63 2122.18Z" stroke="black" stroke-width="1.90098"/> -<g id="text3878-1"> -<text fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="12" letter-spacing="0em"><tspan x="2191.06" y="2154.16">H</tspan></text> -<text fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="12" letter-spacing="0em"><tspan x="2199.73" y="2154.16">⁺</tspan></text> -</g> -<text id="text3878-1_2" fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="12" letter-spacing="0em"><tspan x="2147.49" y="2154.16">NADH</tspan></text> -<g id="text3882-4"> -<text fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="12" letter-spacing="0em"><tspan x="2207.22" y="2160.16">NAD</tspan></text> -<text fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="12" letter-spacing="0em"><tspan x="2232.57" y="2160.16">⁺</tspan></text> -</g> -<g id="text3902-2"> -<text fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="12" letter-spacing="0em"><tspan x="2211.38" y="2117.16">H</tspan><tspan x="2224.27" y="2117.16">O</tspan></text> -<text fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="12" letter-spacing="0em"><tspan x="2220.05" y="2117.16">₂</tspan><tspan x="2233.61" y="2117.16">₂</tspan></text> -</g> -<text id="text3910-9" fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="12" letter-spacing="0em"><tspan x="2243.49" y="2117.16">GSH</tspan></text> -<path id="R_GTHPi" d="M2205.5 2130.96C2222.5 2131.05 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xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="12" letter-spacing="0em"><tspan x="2264.49" y="2198.16">GSH</tspan></text> -<path id="R_GTHOr" d="M2235.5 2173C2241.4 2173.99 2241 2181.99 2241 2181.99M2274.48 2173C2280.38 2173.99 2280 2181.99 2280 2181.99M2135.5 2143.5V2173H2282V2145M2199 2173C2191.05 2174.72 2192 2181.99 2192 2181.99M2153 2173C2145.05 2174.72 2146 2181.99 2146 2181.99" stroke="black" stroke-width="1.39417"/> -<g id="text4017-2"> -<text fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="12" letter-spacing="0em"><tspan x="2141.06" y="2193.16">H</tspan></text> -<text fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="12" letter-spacing="0em"><tspan x="2149.73" y="2193.16">⁺</tspan></text> -</g> -<text id="text4017-2_2" fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="12" letter-spacing="0em"><tspan x="2169.49" y="2193.16">NADPH</tspan></text> -<path id="F_GTHOr" d="M2284.93 2152.37C2281.83 2142.7 2281.83 2142.7 2281.83 2142.7L2279.18 2152.5L2282 2150L2284.93 2152.37ZM2237.98 2180.54C2240.83 2187.11 2240.83 2187.11 2240.83 2187.11L2243.5 2180.5L2240.76 2182.17L2237.98 2180.54ZM2277.22 2179.37C2280.07 2185.94 2280.07 2185.94 2280.07 2185.94L2282.74 2179.33L2280 2181L2277.22 2179.37Z" stroke="black" stroke-width="1.90098"/> -<g id="Group 131"> -<path id="R_DmGSSG" d="M2128 2256.5V2143" stroke="black" stroke-width="2.50699"/> -<path id="F_DmGSSG-8" fill-rule="evenodd" clip-rule="evenodd" d="M2128.01 2255.67L2125 2252.67L2128.17 2264.94L2130.91 2252.5L2128.01 2255.67Z" stroke="black" stroke-width="2.62587"/> -</g> -<g id="Group 132"> -<path id="R_GTHRDt2" d="M2296.25 2152.65L2296.25 2266.5" stroke="black" stroke-width="2.50699"/> -<path id="F_GTHRDt2" fill-rule="evenodd" clip-rule="evenodd" d="M2296.01 2150.26L2293 2153.27L2296.17 2141L2298.91 2153.44L2296.01 2150.26Z" stroke="black" 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y="2114.16">ADP</tspan></text> -</g> -<g id="Group 134"> -<text id="text7967-0-3-7-5-8-7-2-7_2" fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="12" letter-spacing="0em"><tspan x="2501.27" y="2123.16">ATP</tspan></text> -<path id="R_GLUCYS" d="M2435 2134.06L2477.5 2134.06M2510.5 2134.06L2477.5 2134.06M2467.5 2125C2467.5 2134.06 2477.5 2134.06 2477.5 2134.06M2477.5 2134.06C2477.5 2134.06 2486.5 2134.06 2486.5 2125M2450.5 2134.06C2441 2134.06 2441 2125 2441 2125M2510.5 2125C2510.5 2134.06 2501.5 2134.06 2501.5 2134.06" stroke="black" stroke-width="1.68137"/> -<path id="F_GLUCYS" d="M2438.65 2126.2C2441 2116.96 2441 2116.96 2441 2116.96L2442.9 2126.26L2440.83 2123.91L2438.65 2126.2ZM2436.79 2136.95C2433.53 2136.06 2430.26 2135.17 2427 2134.27C2430.22 2133.25 2433.45 2132.23 2436.67 2131.2C2435.88 2132.18 2435.09 2133.15 2434.3 2134.13C2435.13 2135.07 2435.96 2136.01 2436.79 2136.95Z" stroke="black" stroke-width="2.23952"/> -<text 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font-family="Arial" font-size="12" letter-spacing="0em"><tspan x="951.166" y="1332.16">2</tspan></text> -<text fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="12" letter-spacing="0em"><tspan x="933.154" y="1332.16">CO</tspan></text> -</g> -<g id="text5819"> -<text fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="12" letter-spacing="0em"><tspan x="965.062" y="1332.16">H</tspan></text> -<text fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="12" letter-spacing="0em"><tspan x="973.734" y="1332.16">⁺</tspan></text> -</g> -<text id="text5823" fill="black" xml:space="preserve" style="white-space: pre" font-family="Arial" font-size="12" letter-spacing="0em"><tspan x="984.49" y="1332.16">NADH</tspan></text> -<path id="R_ME1m" d="M1032.5 1537.09C1041.5 1536.84 1041.5 1523.5 1041.5 1523.5M952.779 1537.09C945.695 1535.05 945.5 1523.5 945.5 1523.5M1077.26 1536.84C1077.26 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