Mercurial > repos > bimib > marea_2
changeset 231:8e66f173ad60 draft
Uploaded
| author | luca_milaz |
|---|---|
| date | Sat, 03 Aug 2024 11:52:27 +0000 |
| parents | c27fe0032287 |
| children | 1c8792454765 |
| files | marea_2/flux_simulation.py |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/marea_2/flux_simulation.py Sat Aug 03 11:43:47 2024 +0000 +++ b/marea_2/flux_simulation.py Sat Aug 03 11:52:27 2024 +0000 @@ -108,7 +108,7 @@ def write_to_file(dataset: pd.DataFrame, name: str, keep_index:bool=False)->None: - dataset = dataset.T + dataset.index.name = 'Reactions' dataset.to_csv(ARGS.output_folder + name + ".csv", sep = '\t', index = keep_index) ############################ dataset input #################################### @@ -149,7 +149,7 @@ samples_batch = pd.read_csv(ARGS.output_folder + model_name + '_'+ str(i)+'_OPTGP.csv') samplesTotal = pd.concat([samplesTotal, samples_batch], ignore_index = True) - write_to_file(samplesTotal, model_name) + write_to_file(samplesTotal.T, model_name, True) for i in range(0, n_batches): os.remove(ARGS.output_folder + model_name + '_'+ str(i)+'_OPTGP.csv') @@ -180,7 +180,7 @@ samples_batch = pd.read_csv(ARGS.output_folder + model_name + '_'+ str(i)+'_CBS.csv') samplesTotal = pd.concat([samplesTotal, samples_batch], ignore_index = True) - write_to_file(samplesTotal, model_name) + write_to_file(samplesTotal.T, model_name, True) for i in range(0, n_batches): os.remove(ARGS.output_folder + model_name + '_'+ str(i)+'_CBS.csv')