Mercurial > repos > bimib > marea_2

changeset 230:c27fe0032287 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author luca_milaz
date Sat, 03 Aug 2024 11:43:47 +0000
parents ceac7534bf21
children 8e66f173ad60
files marea_2/flux_simulation.py
diffstat 1 files changed, 3 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/marea_2/flux_simulation.py	Sat Aug 03 11:25:23 2024 +0000
+++ b/marea_2/flux_simulation.py	Sat Aug 03 11:43:47 2024 +0000
@@ -231,6 +231,8 @@
     df_quantiles= pd.DataFrame()
 
     df_samples = pd.read_csv(ARGS.output_folder  +  model_name + '.csv', sep = '\t')
+    df_samples = df_samples.round(8)
+
     for output_type in output_types:
         if(output_type == "mean"):
             df_mean = df_samples.mean()
@@ -263,7 +265,7 @@
 def fluxes_analysis(model:cobra.Model,  model_name:str, output_types:List)-> List[pd.DataFrame]:
 
     df_pFBA = pd.DataFrame()
-    
+    df_FVA= pd.DataFrame()
     df_sensitivity= pd.DataFrame()
 
     for output_type in output_types: