Mercurial > repos > bimib > marea_2

changeset 351:979337507901 draft

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Uploaded
author luca_milaz
date Thu, 29 Aug 2024 20:15:41 +0000
parents e397e04f45e8
children 9f5db0e377a6
files marea_2/custom_data_generator.xml
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/marea_2/custom_data_generator.xml	Thu Aug 29 20:10:56 2024 +0000
+++ b/marea_2/custom_data_generator.xml	Thu Aug 29 20:15:41 2024 +0000
@@ -43,8 +43,7 @@
 What it does
 -------------
 
-This tool generates two files containing reactions and rules respectively, starting from a custom model in JSON or XML format, that can be used as inputs for the RAS and RPS generator modules.
-
+This tool generates four files containing reactions, rules, bounds and growth medium, starting from a custom model in JSON or XML format, that can be used as inputs for the RAS and RPS generator modules.
 Accepted files:
     - A model: JSON or XML file reporting reactions and rules contained in the model.   
 
@@ -55,6 +54,8 @@
 The tool generates:
     - rules: reporting the rules for each reaction in the custom model given. Format: csv or pickle.
     - reactions: reporting the reactions in the custom model given. Format: csv or pickle.
+    - bounds: reporting the lower and upper bounds of custom model. Format: csv or pickle.
+    - medium: reporting a simple list containing the model exchange reactions. Format: csv or pickle.
     - a log file (.txt).
     ]]>
     </help>