Mercurial > repos > bimib > marea_2
changeset 351:979337507901 draft
Uploaded
author | luca_milaz |
---|---|
date | Thu, 29 Aug 2024 20:15:41 +0000 |
parents | e397e04f45e8 |
children | 9f5db0e377a6 |
files | marea_2/custom_data_generator.xml |
diffstat | 1 files changed, 3 insertions(+), 2 deletions(-) [+] |
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--- a/marea_2/custom_data_generator.xml Thu Aug 29 20:10:56 2024 +0000 +++ b/marea_2/custom_data_generator.xml Thu Aug 29 20:15:41 2024 +0000 @@ -43,8 +43,7 @@ What it does ------------- -This tool generates two files containing reactions and rules respectively, starting from a custom model in JSON or XML format, that can be used as inputs for the RAS and RPS generator modules. - +This tool generates four files containing reactions, rules, bounds and growth medium, starting from a custom model in JSON or XML format, that can be used as inputs for the RAS and RPS generator modules. Accepted files: - A model: JSON or XML file reporting reactions and rules contained in the model. @@ -55,6 +54,8 @@ The tool generates: - rules: reporting the rules for each reaction in the custom model given. Format: csv or pickle. - reactions: reporting the reactions in the custom model given. Format: csv or pickle. + - bounds: reporting the lower and upper bounds of custom model. Format: csv or pickle. + - medium: reporting a simple list containing the model exchange reactions. Format: csv or pickle. - a log file (.txt). ]]> </help>