changeset 222:a15f5ef34d18 draft

Uploaded

--- a/marea_2/flux_to_map.py	Thu Aug 01 15:55:30 2024 +0000
+++ b/marea_2/flux_to_map.py	Thu Aug 01 15:57:21 2024 +0000
@@ -376,6 +376,7 @@
     Encodes possible arrow colors based on their meaning in the enrichment process.
     """
     Invalid       = "#BEBEBE" # gray, fold-change under treshold
+    Transparent   = "#ffffff00" # white, not significant p-value
     UpRegulated   = "#ecac68" # red, up-regulated reaction
     DownRegulated = "#6495ed" # blue, down-regulated reaction
 
@@ -429,7 +430,6 @@
         # Now we style the arrow head(s):
         idOpt1, idOpt2 = getArrowHeadElementId(reactionId)
         self.applyTo(idOpt1, metabMap, self.toStyleStr(downSizedForTips = True))
-        print(self.toStyleStr(downSizedForTips = True))
         if idOpt2: self.applyTo(idOpt2, metabMap, self.toStyleStr(downSizedForTips = True))
 
 
@@ -486,30 +486,29 @@
         pValue = values[0]
         foldChange = values[1]
         z_score = values[2]
-        print(reactionId)
+
         if isinstance(foldChange, str): foldChange = float(foldChange)
         if pValue >= ARGS.pValue: # pValue above tresh: dashed arrow
             INSIGNIFICANT_ARROW.styleReactionElements(metabMap, reactionId)
             INSIGNIFICANT_ARROW.styleReactionElements(metabMap, reactionId, mindReactionDir = False)
-            print(f'1')
+
             continue
 
         if abs(foldChange) <  (ARGS.fChange - 1) / (abs(ARGS.fChange) + 1):
             INVALID_ARROW.styleReactionElements(metabMap, reactionId)
             INVALID_ARROW.styleReactionElements(metabMap, reactionId, mindReactionDir = False)
-            print(f'2')
+
             continue
         
         width = Arrow.MAX_W
         if not math.isinf(foldChange):
             try: 
                 width = max(abs(z_score * Arrow.MAX_W) / maxNumericZScore, Arrow.MIN_W) 
-                print(f'3')
+
             except ZeroDivisionError: pass
         
         #if not reactionId.endswith("_RV"): # RV stands for reversible reactions
         #    Arrow(width, ArrowColor.fromFoldChangeSign(foldChange)).styleReactionElements(metabMap, reactionId)
-        #    print(f'4')
         #    continue
         
         #reactionId = reactionId[:-3] # Remove "_RV"
@@ -524,14 +523,11 @@
         # vvv These 2 if statements can both be true and can both happen
         if ARGS.net: # style arrow head(s):
             arrow.styleReactionElements(metabMap, reactionId + ("_B" if inversionScore == 2 else "_F"))
-            arrow.applyTo(("F_" if inversionScore == 2 else "B_") + reactionId, metabMap, f";stroke:#ffffff00;stroke-width:{width};stroke-dasharray:'5,5'")
-            print("prova")
-            print(("F_" if inversionScore == 2 else "B_") + reactionId)
-            print(f'5')
+            arrow.applyTo(("F_" if inversionScore == 2 else "B_") + reactionId, metabMap, f";stroke:{ArrowColor.Transparent};stroke-width:0;stroke-dasharray:None")
         
         if not ARGS.using_RAS: # style arrow body
             arrow.styleReactionElements(metabMap, reactionId, mindReactionDir = False)
-            print(f'6')
+
 
 ############################ split class ######################################
 def split_class(classes :pd.DataFrame, resolve_rules :Dict[str, List[float]]) -> Dict[str, List[List[float]]]: