Mercurial > repos > bimib > marea_2

changeset 271:d879c594013d draft

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Uploaded
author luca_milaz
date Sun, 04 Aug 2024 16:41:12 +0000
parents 4617f8a3ab28
children 3ee426f114d6
files marea_2/flux_to_map.py
diffstat 1 files changed, 5 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/marea_2/flux_to_map.py	Sun Aug 04 16:36:03 2024 +0000
+++ b/marea_2/flux_to_map.py	Sun Aug 04 16:41:12 2024 +0000
@@ -820,9 +820,8 @@
 
 def gray_to_red_cmap(value):
     """Map a normalized value to RGB color transitioning from gray to red."""
-    # Ensure value is in the range [0, 1]
     value = abs(value)
-    r = value + 0.5
+    r = 0.5 + 0.5 * value
     g = 0.5 - 0.5 * value
     b = 0.5 - 0.5 * value
     
@@ -867,23 +866,23 @@
 
         for rxn_id in ids:
             arrow = Arrow(width=5, col=colors_median[rxn_id])
-            arrow.applyTo(arrow.getMapReactionId(rxn_id, mindReactionDir=False), metabMap_median, arrow.toStyleStr())
+            arrow.applyTo(arrow.getMapReactionId(rxn_id, mindReactionDir=True), metabMap_median, arrow.toStyleStr())
             # Now we style the arrow head(s):
             idOpt1, idOpt2 = getArrowHeadElementId(arrow.getMapReactionId(rxn_id, mindReactionDir=True))
             arrow.applyTo(idOpt1, metabMap_median, arrow.toStyleStr(downSizedForTips = True))
             if idOpt2: arrow.applyTo(idOpt2, metabMap_median, arrow.toStyleStr(downSizedForTips = True))
 
             arrow = Arrow(width=5, col=colors_mean[rxn_id])
-            arrow.applyTo(arrow.getMapReactionId(rxn_id, mindReactionDir=False), metabMap_mean, arrow.toStyleStr())
+            arrow.applyTo(arrow.getMapReactionId(rxn_id, mindReactionDir=True), metabMap_mean, arrow.toStyleStr())
             # Now we style the arrow head(s):
             idOpt1, idOpt2 = getArrowHeadElementId(arrow.getMapReactionId(rxn_id, mindReactionDir=True))
             arrow.applyTo(idOpt1, metabMap_mean, arrow.toStyleStr(downSizedForTips = True))
             if idOpt2: arrow.applyTo(idOpt2, metabMap_mean, arrow.toStyleStr(downSizedForTips = True))
 
-        svgFilePath = utils.FilePath("SVG Map mean - class " + str(key), ext = utils.FileFormat.SVG, prefix="result")
+        svgFilePath = utils.FilePath("SVG Map mean - " + str(key), ext = utils.FileFormat.SVG, prefix="result")
         utils.writeSvg(svgFilePath, metabMap_mean)
 
-        svgFilePath = utils.FilePath("SVG Map median - class " + str(key), ext = utils.FileFormat.SVG, prefix="result")
+        svgFilePath = utils.FilePath("SVG Map median - " + str(key), ext = utils.FileFormat.SVG, prefix="result")
         utils.writeSvg(svgFilePath, metabMap_median)