Mercurial > repos > bimib > marea_2_0

changeset 247:419c4fc75d6c draft

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Uploaded
author luca_milaz
date Mon, 08 Jul 2024 13:42:35 +0000
parents c2981cdb2dd7
children 4f3c4587bd4b
files marea_2_0/utils/general_utils.py
diffstat 1 files changed, 1 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/marea_2_0/utils/general_utils.py	Mon Jul 08 13:37:54 2024 +0000
+++ b/marea_2_0/utils/general_utils.py	Mon Jul 08 13:42:35 2024 +0000
@@ -553,6 +553,7 @@
         if(self is Model.Custom):
             return self.load_custom_model(customPath, customExtension)
         else:
+            (model, errors) = cobra.io.validate_sbml_model(FilePath(f"{self.name}", FileFormat.XML, prefix = f"{toolDir}/local/COBRA models/"))
             return cobra.io.read_sbml_model(FilePath(f"{self.name}", FileFormat.XML, prefix = f"{toolDir}/local/COBRA models/"))
     
     def load_custom_model(self, file_path :FilePath, ext :Optional[FileFormat] = None) -> cobra.Model: