Mercurial > repos > biocomp-ibens > alfa
annotate alfa/.shed.yml @ 0:e360f840a92e draft default tip
Uploaded
| author | biocomp-ibens |
|---|---|
| date | Wed, 16 May 2018 09:49:18 -0400 |
| parents | |
| children |
| rev | line source |
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| 0 | 1 categories: |
| 2 - Graphics | |
| 3 - Next Gen Mappers | |
| 4 - Sequence Analysis | |
| 5 - Visualization | |
| 6 description: Plot the distribution of the genomic features captured by aligned reads | |
| 7 long_description: | |
| 8 ALFA provides a global overview of features distribution composing New Generation Sequencing dataset(s). | |
| 9 Given a set of aligned reads (BAM files) and an annotation file (GTF format), the tool produces plots of the raw and normalized distributions of those reads among genomic categories (stop codon, 5'-UTR, CDS, intergenic, etc.) and biotypes (protein coding genes, miRNA, tRNA, etc.). Whatever the sequencing technique, whatever the organism. | |
| 10 https://github.com/biocompibens/ALFA | |
| 11 name: alfa | |
| 12 owner: charles_bernard | |
| 13 remote_repository_url: https://github.com/biocompibens/ALFA/tree/master/Galaxy_toolshed_repositories/ALFA | |
| 14 type: unrestricted |