Mercurial > repos > bioinformatics_lab_ufsc > epifinder
comparison test-data/command-epifinder-parameters.txt @ 0:a8b913eaad2c draft
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| author | bioinformatics_lab_ufsc |
|---|---|
| date | Wed, 24 Mar 2021 19:21:37 +0000 |
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| -1:000000000000 | 0:a8b913eaad2c |
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| 1 | |
| 2 ---- Running Parameters ---- | |
| 3 BepiPred-2.0 Threshold : 0.6 | |
| 4 Min epitope length : 10 | |
| 5 Max epitope length : 30 | |
| 6 | |
| 7 ---- Softwares Threshold ---- | |
| 8 Emini : 0.8 | |
| 9 Parker : 0.8 | |
| 10 Chou Fosman : 0.8 | |
| 11 Karplus Schulz : 0.8 | |
| 12 Kolaskar : 0.8 | |
| 13 | |
| 14 ---- Proteomes ---- | |
| 15 Alias File | |
| 16 test_proteom /usr/local/bioinfo/stingrayGalaxy/tools/stingray/epifinder/test-data/proteom.fasta | |
| 17 | |
| 18 ---- Blast ---- | |
| 19 Identity : 90.0 | |
| 20 Cover : 90.0 | |
| 21 Word size : 4 | |
| 22 Task blastp-short: blastp-short | |
| 23 | |
| 24 ---- Stats ---- | |
| 25 Processed proteins : 6 | |
| 26 NGlycosylated proteins : 0 | |
| 27 Identified epitopes : 3 | |
| 28 N-glycosylated epitopes: 0 |