Mercurial > repos > bioitcore > chimerascan
changeset 3:27d8ed014662 draft
planemo upload commit 93e677982c3636da455de2f827a87e516c7985ac-dirty
author | bioitcore |
---|---|
date | Tue, 12 Sep 2017 14:13:20 -0400 |
parents | ec38f053b647 |
children | 713d8c903d0d |
files | chimerascan.xml |
diffstat | 1 files changed, 4 insertions(+), 2 deletions(-) [+] |
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--- a/chimerascan.xml Tue Sep 12 13:59:07 2017 -0400 +++ b/chimerascan.xml Tue Sep 12 14:13:20 2017 -0400 @@ -1,13 +1,15 @@ <tool id="chimerascan" name="ChimeraScan"> <description>A tool for identifying chimeric transcription in sequencing data.</description> - <command detect_errors="exit_code"> - bash $__tool_directory__/run.sh && python $__tool_directory__/chimerascan_run.py -p 8 $__tool_directory__/myindex + <command detect_errors="exit_code"><![CDATA[ + bash $__tool_directory__/run.sh && + python $__tool_directory__/chimerascan_run.py -p 8 $__tool_directory__/myindex #if $input_type_conditional.chimerascan_input_type == "paired" $input_type_conditional.input_1 $input_type_conditional.input_2 #else $input_type_conditional.input.forward $input_type_conditional.input.reverse #end if $galaxy_output + ]]> </command> <inputs> <conditional name="input_type_conditional">