annotate Galaxy-Workflow-linkX.ga @ 7:90098d9cb691 default tip

workflows updated
author biomonika <biomonika@psu.edu>
date Fri, 20 Feb 2015 18:34:34 -0500
parents 05c27700e5ca
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
2 "a_galaxy_workflow": "true",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
3 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
4 "format-version": "0.1",
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
5 "name": "linkX (imported from uploaded file)",
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
6 "steps": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
7 "0": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
8 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
9 "id": 0,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
10 "input_connections": {},
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
11 "inputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
12 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
13 "description": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
14 "name": "mother_1.fastq"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
15 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
16 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
17 "name": "Input dataset",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
18 "outputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
19 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
20 "left": 243.86113023757935,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
21 "top": 294.6944737434387
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
22 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
23 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
24 "tool_id": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
25 "tool_state": "{\"name\": \"mother_1.fastq\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
26 "tool_version": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
27 "type": "data_input",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
28 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
29 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
30 "1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
31 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
32 "id": 1,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
33 "input_connections": {},
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
34 "inputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
35 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
36 "description": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
37 "name": "mother_2.fastq"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
38 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
39 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
40 "name": "Input dataset",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
41 "outputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
42 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
43 "left": 229.8506932258606,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
44 "top": 442.68058824539185
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
45 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
46 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
47 "tool_id": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
48 "tool_state": "{\"name\": \"mother_2.fastq\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
49 "tool_version": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
50 "type": "data_input",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
51 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
52 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
53 "2": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
54 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
55 "id": 2,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
56 "input_connections": {},
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
57 "inputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
58 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
59 "description": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
60 "name": "father_1.fastq"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
61 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
62 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
63 "name": "Input dataset",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
64 "outputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
65 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
66 "left": 226.84724473953247,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
67 "top": 597.6805882453918
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
68 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
69 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
70 "tool_id": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
71 "tool_state": "{\"name\": \"father_1.fastq\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
72 "tool_version": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
73 "type": "data_input",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
74 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
75 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
76 "3": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
77 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
78 "id": 3,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
79 "input_connections": {},
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
80 "inputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
81 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
82 "description": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
83 "name": "father_2.fastq"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
84 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
85 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
86 "name": "Input dataset",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
87 "outputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
88 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
89 "left": 205.8576512336731,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
90 "top": 687.6805882453918
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
91 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
92 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
93 "tool_id": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
94 "tool_state": "{\"name\": \"father_2.fastq\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
95 "tool_version": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
96 "type": "data_input",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
97 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
98 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
99 "4": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
100 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
101 "id": 4,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
102 "input_connections": {},
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
103 "inputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
104 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
105 "description": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
106 "name": "daughter_1.fastq"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
107 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
108 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
109 "name": "Input dataset",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
110 "outputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
111 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
112 "left": 199.65971422195435,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
113 "top": 847.0208592414856
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
114 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
115 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
116 "tool_id": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
117 "tool_state": "{\"name\": \"daughter_1.fastq\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
118 "tool_version": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
119 "type": "data_input",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
120 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
121 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
122 "5": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
123 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
124 "id": 5,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
125 "input_connections": {},
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
126 "inputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
127 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
128 "description": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
129 "name": "daughter_2.fastq"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
130 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
131 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
132 "name": "Input dataset",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
133 "outputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
134 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
135 "left": 205.66667222976685,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
136 "top": 966.0139012336731
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
137 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
138 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
139 "tool_id": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
140 "tool_state": "{\"name\": \"daughter_2.fastq\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
141 "tool_version": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
142 "type": "data_input",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
143 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
144 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
145 "6": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
146 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
147 "id": 6,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
148 "input_connections": {},
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
149 "inputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
150 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
151 "description": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
152 "name": "son_1.fastq"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
153 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
154 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
155 "name": "Input dataset",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
156 "outputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
157 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
158 "left": 215.66667222976685,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
159 "top": 1110.024399280548
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
160 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
161 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
162 "tool_id": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
163 "tool_state": "{\"name\": \"son_1.fastq\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
164 "tool_version": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
165 "type": "data_input",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
166 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
167 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
168 "7": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
169 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
170 "id": 7,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
171 "input_connections": {},
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
172 "inputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
173 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
174 "description": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
175 "name": "son_2.fastq"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
176 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
177 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
178 "name": "Input dataset",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
179 "outputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
180 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
181 "left": 206.67363023757935,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
182 "top": 1224.0174412727356
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
183 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
184 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
185 "tool_id": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
186 "tool_state": "{\"name\": \"son_2.fastq\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
187 "tool_version": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
188 "type": "data_input",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
189 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
190 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
191 "8": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
192 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
193 "id": 8,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
194 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
195 "input_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
196 "id": 0,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
197 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
198 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
199 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
200 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
201 "name": "FASTQ Groomer",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
202 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
203 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
204 "name": "output_file",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
205 "type": "fastqsanger"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
206 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
207 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
208 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
209 "left": 437.85417222976685,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
210 "top": 273.6875157356262
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
211 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
212 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
213 "HideDatasetActionoutput_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
214 "action_arguments": {},
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
215 "action_type": "HideDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
216 "output_name": "output_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
217 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
218 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
219 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
220 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.0.4",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
221 "tool_state": "{\"__page__\": 0, \"input_type\": \"\\\"sanger\\\"\", \"__rerun_remap_job_id__\": null, \"options_type\": \"{\\\"options_type_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"input_file\": \"null\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
222 "tool_version": "1.0.4",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
223 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
224 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
225 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
226 "9": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
227 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
228 "id": 9,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
229 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
230 "input_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
231 "id": 1,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
232 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
233 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
234 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
235 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
236 "name": "FASTQ Groomer",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
237 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
238 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
239 "name": "output_file",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
240 "type": "fastqsanger"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
241 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
242 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
243 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
244 "left": 423.86113023757935,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
245 "top": 433.6875157356262
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
246 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
247 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
248 "HideDatasetActionoutput_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
249 "action_arguments": {},
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
250 "action_type": "HideDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
251 "output_name": "output_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
252 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
253 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
254 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
255 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.0.4",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
256 "tool_state": "{\"__page__\": 0, \"input_type\": \"\\\"sanger\\\"\", \"__rerun_remap_job_id__\": null, \"options_type\": \"{\\\"options_type_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"input_file\": \"null\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
257 "tool_version": "1.0.4",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
258 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
259 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
260 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
261 "10": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
262 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
263 "id": 10,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
264 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
265 "input_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
266 "id": 2,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
267 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
268 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
269 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
270 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
271 "name": "FASTQ Groomer",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
272 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
273 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
274 "name": "output_file",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
275 "type": "fastqsanger"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
276 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
277 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
278 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
279 "left": 430.8576512336731,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
280 "top": 584.6945042610168
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
281 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
282 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
283 "HideDatasetActionoutput_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
284 "action_arguments": {},
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
285 "action_type": "HideDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
286 "output_name": "output_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
287 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
288 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
289 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
290 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.0.4",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
291 "tool_state": "{\"__page__\": 0, \"input_type\": \"\\\"sanger\\\"\", \"__rerun_remap_job_id__\": null, \"options_type\": \"{\\\"options_type_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"input_file\": \"null\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
292 "tool_version": "1.0.4",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
293 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
294 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
295 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
296 "11": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
297 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
298 "id": 11,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
299 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
300 "input_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
301 "id": 3,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
302 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
303 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
304 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
305 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
306 "name": "FASTQ Groomer",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
307 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
308 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
309 "name": "output_file",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
310 "type": "fastqsanger"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
311 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
312 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
313 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
314 "left": 430.8576512336731,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
315 "top": 716.6910252571106
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
316 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
317 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
318 "HideDatasetActionoutput_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
319 "action_arguments": {},
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
320 "action_type": "HideDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
321 "output_name": "output_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
322 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
323 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
324 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
325 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.0.4",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
326 "tool_state": "{\"__page__\": 0, \"input_type\": \"\\\"sanger\\\"\", \"__rerun_remap_job_id__\": null, \"options_type\": \"{\\\"options_type_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"input_file\": \"null\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
327 "tool_version": "1.0.4",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
328 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
329 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
330 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
331 "12": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
332 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
333 "id": 12,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
334 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
335 "input_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
336 "id": 4,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
337 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
338 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
339 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
340 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
341 "name": "FASTQ Groomer",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
342 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
343 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
344 "name": "output_file",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
345 "type": "fastqsanger"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
346 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
347 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
348 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
349 "left": 426.69096422195435,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
350 "top": 839.0173802375793
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
351 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
352 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
353 "HideDatasetActionoutput_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
354 "action_arguments": {},
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
355 "action_type": "HideDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
356 "output_name": "output_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
357 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
358 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
359 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
360 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.0.4",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
361 "tool_state": "{\"__page__\": 0, \"input_type\": \"\\\"sanger\\\"\", \"__rerun_remap_job_id__\": null, \"options_type\": \"{\\\"options_type_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"input_file\": \"null\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
362 "tool_version": "1.0.4",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
363 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
364 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
365 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
366 "13": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
367 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
368 "id": 13,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
369 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
370 "input_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
371 "id": 5,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
372 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
373 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
374 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
375 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
376 "name": "FASTQ Groomer",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
377 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
378 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
379 "name": "output_file",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
380 "type": "fastqsanger"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
381 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
382 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
383 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
384 "left": 426.69096422195435,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
385 "top": 975.0243992805481
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
386 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
387 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
388 "HideDatasetActionoutput_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
389 "action_arguments": {},
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
390 "action_type": "HideDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
391 "output_name": "output_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
392 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
393 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
394 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
395 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.0.4",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
396 "tool_state": "{\"__page__\": 0, \"input_type\": \"\\\"sanger\\\"\", \"__rerun_remap_job_id__\": null, \"options_type\": \"{\\\"options_type_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"input_file\": \"null\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
397 "tool_version": "1.0.4",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
398 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
399 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
400 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
401 "14": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
402 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
403 "id": 14,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
404 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
405 "input_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
406 "id": 6,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
407 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
408 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
409 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
410 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
411 "name": "FASTQ Groomer",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
412 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
413 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
414 "name": "output_file",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
415 "type": "fastqsanger"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
416 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
417 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
418 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
419 "left": 429.6944432258606,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
420 "top": 1096.013901233673
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
421 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
422 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
423 "HideDatasetActionoutput_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
424 "action_arguments": {},
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
425 "action_type": "HideDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
426 "output_name": "output_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
427 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
428 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
429 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
430 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.0.4",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
431 "tool_state": "{\"__page__\": 0, \"input_type\": \"\\\"sanger\\\"\", \"__rerun_remap_job_id__\": null, \"options_type\": \"{\\\"options_type_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"input_file\": \"null\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
432 "tool_version": "1.0.4",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
433 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
434 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
435 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
436 "15": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
437 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
438 "id": 15,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
439 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
440 "input_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
441 "id": 7,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
442 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
443 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
444 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
445 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
446 "name": "FASTQ Groomer",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
447 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
448 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
449 "name": "output_file",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
450 "type": "fastqsanger"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
451 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
452 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
453 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
454 "left": 439.6944432258606,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
455 "top": 1235.024399280548
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
456 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
457 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
458 "HideDatasetActionoutput_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
459 "action_arguments": {},
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
460 "action_type": "HideDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
461 "output_name": "output_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
462 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
463 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
464 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
465 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.0.4",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
466 "tool_state": "{\"__page__\": 0, \"input_type\": \"\\\"sanger\\\"\", \"__rerun_remap_job_id__\": null, \"options_type\": \"{\\\"options_type_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"input_file\": \"null\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
467 "tool_version": "1.0.4",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
468 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
469 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
470 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
471 "16": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
472 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
473 "id": 16,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
474 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
475 "inputs|left_input": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
476 "id": 8,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
477 "output_name": "output_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
478 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
479 "inputs|right_input": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
480 "id": 9,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
481 "output_name": "output_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
482 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
483 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
484 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
485 "name": "Trinity",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
486 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
487 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
488 "name": "trinity_log",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
489 "type": "txt"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
490 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
491 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
492 "name": "assembled_transcripts",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
493 "type": "fasta"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
494 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
495 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
496 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
497 "left": 835.8576512336731,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
498 "top": 132.33334398269653
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
499 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
500 "post_job_actions": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
501 "HideDatasetActionassembled_transcripts": {
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
502 "action_arguments": {},
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
503 "action_type": "HideDatasetAction",
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
504 "output_name": "assembled_transcripts"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
505 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
506 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
507 "tool_errors": null,
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
508 "tool_id": "toolshed.g2.bx.psu.edu/repos/biomonika/trinityrnaseq/trinityrnaseq/0.0.1",
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
509 "tool_state": "{\"__page__\": 0, \"additional_params\": \"{\\\"use_additional\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"inputs\": \"{\\\"paired_or_single\\\": \\\"paired\\\", \\\"library_type\\\": \\\"None\\\", \\\"group_pairs_distance\\\": \\\"500\\\", \\\"left_input\\\": null, \\\"__current_case__\\\": 0, \\\"path_reinforcement_distance\\\": \\\"75\\\", \\\"right_input\\\": null}\", \"__rerun_remap_job_id__\": null, \"JM\": \"\\\"1G\\\"\", \"CPU\": \"\\\"2\\\"\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
510 "tool_version": "0.0.1",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
511 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
512 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
513 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
514 "17": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
515 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
516 "id": 17,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
517 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
518 "input1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
519 "id": 16,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
520 "output_name": "assembled_transcripts"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
521 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
522 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
523 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
524 "name": "reformat_trinity_header",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
525 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
526 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
527 "name": "output",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
528 "type": "fasta"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
529 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
530 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
531 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
532 "left": 1139.920151233673,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
533 "top": 149.39930772781372
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
534 },
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
535 "post_job_actions": {},
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
536 "tool_errors": null,
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
537 "tool_id": "toolshed.g2.bx.psu.edu/repos/biomonika/linkyx/reformat_trinity_header/1.1",
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
538 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\"}",
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
539 "tool_version": "1.1",
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
540 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
541 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
542 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
543 "18": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
544 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
545 "id": 18,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
546 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
547 "genomeSource|ownFile": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
548 "id": 17,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
549 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
550 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
551 "paired|input1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
552 "id": 8,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
553 "output_name": "output_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
554 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
555 "paired|input2": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
556 "id": 9,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
557 "output_name": "output_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
558 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
559 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
560 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
561 "name": "Map with BWA for Illumina",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
562 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
563 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
564 "name": "output",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
565 "type": "sam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
566 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
567 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
568 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
569 "left": 789.6944432258606,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
570 "top": 381.0139012336731
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
571 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
572 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
573 "RenameDatasetActionoutput": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
574 "action_arguments": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
575 "newname": "mother.sam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
576 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
577 "action_type": "RenameDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
578 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
579 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
580 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
581 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
582 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bwa_wrappers/bwa_wrapper/1.2.3",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
583 "tool_state": "{\"genomeSource\": \"{\\\"refGenomeSource\\\": \\\"history\\\", \\\"ownFile\\\": null, \\\"__current_case__\\\": 1}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"paired\": \"{\\\"input2\\\": null, \\\"sPaired\\\": \\\"paired\\\", \\\"input1\\\": null, \\\"__current_case__\\\": 1}\", \"params\": \"{\\\"__current_case__\\\": 0, \\\"source_select\\\": \\\"pre_set\\\"}\", \"suppressHeader\": \"\\\"False\\\"\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
584 "tool_version": "1.2.3",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
585 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
586 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
587 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
588 "19": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
589 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
590 "id": 19,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
591 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
592 "genomeSource|ownFile": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
593 "id": 17,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
594 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
595 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
596 "paired|input1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
597 "id": 10,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
598 "output_name": "output_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
599 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
600 "paired|input2": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
601 "id": 11,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
602 "output_name": "output_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
603 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
604 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
605 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
606 "name": "Map with BWA for Illumina",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
607 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
608 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
609 "name": "output",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
610 "type": "sam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
611 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
612 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
613 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
614 "left": 746.3611302375793,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
615 "top": 627.6805882453918
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
616 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
617 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
618 "RenameDatasetActionoutput": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
619 "action_arguments": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
620 "newname": "father.sam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
621 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
622 "action_type": "RenameDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
623 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
624 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
625 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
626 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
627 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bwa_wrappers/bwa_wrapper/1.2.3",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
628 "tool_state": "{\"genomeSource\": \"{\\\"refGenomeSource\\\": \\\"history\\\", \\\"ownFile\\\": null, \\\"__current_case__\\\": 1}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"paired\": \"{\\\"input2\\\": null, \\\"sPaired\\\": \\\"paired\\\", \\\"input1\\\": null, \\\"__current_case__\\\": 1}\", \"params\": \"{\\\"__current_case__\\\": 0, \\\"source_select\\\": \\\"pre_set\\\"}\", \"suppressHeader\": \"\\\"False\\\"\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
629 "tool_version": "1.2.3",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
630 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
631 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
632 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
633 "20": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
634 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
635 "id": 20,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
636 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
637 "genomeSource|ownFile": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
638 "id": 17,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
639 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
640 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
641 "paired|input1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
642 "id": 12,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
643 "output_name": "output_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
644 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
645 "paired|input2": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
646 "id": 13,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
647 "output_name": "output_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
648 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
649 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
650 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
651 "name": "Map with BWA for Illumina",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
652 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
653 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
654 "name": "output",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
655 "type": "sam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
656 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
657 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
658 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
659 "left": 734.6945042610168,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
660 "top": 852.0208592414856
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
661 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
662 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
663 "RenameDatasetActionoutput": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
664 "action_arguments": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
665 "newname": "daughter.sam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
666 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
667 "action_type": "RenameDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
668 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
669 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
670 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
671 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
672 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bwa_wrappers/bwa_wrapper/1.2.3",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
673 "tool_state": "{\"genomeSource\": \"{\\\"refGenomeSource\\\": \\\"history\\\", \\\"ownFile\\\": null, \\\"__current_case__\\\": 1}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"paired\": \"{\\\"input2\\\": null, \\\"sPaired\\\": \\\"paired\\\", \\\"input1\\\": null, \\\"__current_case__\\\": 1}\", \"params\": \"{\\\"__current_case__\\\": 0, \\\"source_select\\\": \\\"pre_set\\\"}\", \"suppressHeader\": \"\\\"False\\\"\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
674 "tool_version": "1.2.3",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
675 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
676 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
677 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
678 "21": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
679 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
680 "id": 21,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
681 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
682 "genomeSource|ownFile": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
683 "id": 17,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
684 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
685 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
686 "paired|input1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
687 "id": 14,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
688 "output_name": "output_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
689 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
690 "paired|input2": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
691 "id": 15,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
692 "output_name": "output_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
693 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
694 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
695 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
696 "name": "Map with BWA for Illumina",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
697 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
698 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
699 "name": "output",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
700 "type": "sam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
701 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
702 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
703 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
704 "left": 770.6840672492981,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
705 "top": 1096.013901233673
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
706 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
707 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
708 "RenameDatasetActionoutput": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
709 "action_arguments": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
710 "newname": "son.sam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
711 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
712 "action_type": "RenameDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
713 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
714 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
715 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
716 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
717 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bwa_wrappers/bwa_wrapper/1.2.3",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
718 "tool_state": "{\"genomeSource\": \"{\\\"refGenomeSource\\\": \\\"history\\\", \\\"ownFile\\\": null, \\\"__current_case__\\\": 1}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"paired\": \"{\\\"input2\\\": null, \\\"sPaired\\\": \\\"paired\\\", \\\"input1\\\": null, \\\"__current_case__\\\": 1}\", \"params\": \"{\\\"__current_case__\\\": 0, \\\"source_select\\\": \\\"pre_set\\\"}\", \"suppressHeader\": \"\\\"False\\\"\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
719 "tool_version": "1.2.3",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
720 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
721 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
722 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
723 "22": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
724 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
725 "id": 22,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
726 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
727 "source|input1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
728 "id": 18,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
729 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
730 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
731 "source|ref_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
732 "id": 17,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
733 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
734 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
735 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
736 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
737 "name": "SAM-to-BAM",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
738 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
739 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
740 "name": "output1",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
741 "type": "bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
742 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
743 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
744 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
745 "left": 998.6874852180481,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
746 "top": 421.0139012336731
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
747 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
748 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
749 "HideDatasetActionoutput1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
750 "action_arguments": {},
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
751 "action_type": "HideDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
752 "output_name": "output1"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
753 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
754 "RenameDatasetActionoutput1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
755 "action_arguments": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
756 "newname": "mother.bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
757 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
758 "action_type": "RenameDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
759 "output_name": "output1"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
760 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
761 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
762 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
763 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/sam_to_bam/sam_to_bam/1.1.4",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
764 "tool_state": "{\"source\": \"{\\\"index_source\\\": \\\"history\\\", \\\"ref_file\\\": null, \\\"input1\\\": null, \\\"__current_case__\\\": 1}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
765 "tool_version": "1.1.4",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
766 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
767 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
768 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
769 "23": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
770 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
771 "id": 23,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
772 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
773 "source|input1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
774 "id": 19,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
775 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
776 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
777 "source|ref_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
778 "id": 17,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
779 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
780 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
781 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
782 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
783 "name": "SAM-to-BAM",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
784 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
785 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
786 "name": "output1",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
787 "type": "bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
788 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
789 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
790 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
791 "left": 998.8611912727356,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
792 "top": 670.6840672492981
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
793 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
794 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
795 "HideDatasetActionoutput1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
796 "action_arguments": {},
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
797 "action_type": "HideDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
798 "output_name": "output1"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
799 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
800 "RenameDatasetActionoutput1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
801 "action_arguments": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
802 "newname": "father.bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
803 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
804 "action_type": "RenameDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
805 "output_name": "output1"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
806 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
807 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
808 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
809 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/sam_to_bam/sam_to_bam/1.1.4",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
810 "tool_state": "{\"source\": \"{\\\"index_source\\\": \\\"history\\\", \\\"ref_file\\\": null, \\\"input1\\\": null, \\\"__current_case__\\\": 1}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
811 "tool_version": "1.1.4",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
812 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
813 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
814 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
815 "24": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
816 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
817 "id": 24,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
818 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
819 "source|input1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
820 "id": 20,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
821 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
822 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
823 "source|ref_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
824 "id": 17,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
825 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
826 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
827 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
828 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
829 "name": "SAM-to-BAM",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
830 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
831 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
832 "name": "output1",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
833 "type": "bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
834 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
835 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
836 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
837 "left": 982.6806492805481,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
838 "top": 891.0139622688293
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
839 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
840 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
841 "HideDatasetActionoutput1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
842 "action_arguments": {},
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
843 "action_type": "HideDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
844 "output_name": "output1"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
845 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
846 "RenameDatasetActionoutput1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
847 "action_arguments": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
848 "newname": "daughter.bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
849 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
850 "action_type": "RenameDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
851 "output_name": "output1"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
852 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
853 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
854 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
855 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/sam_to_bam/sam_to_bam/1.1.4",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
856 "tool_state": "{\"source\": \"{\\\"index_source\\\": \\\"history\\\", \\\"ref_file\\\": null, \\\"input1\\\": null, \\\"__current_case__\\\": 1}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
857 "tool_version": "1.1.4",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
858 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
859 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
860 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
861 "25": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
862 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
863 "id": 25,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
864 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
865 "source|input1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
866 "id": 21,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
867 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
868 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
869 "source|ref_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
870 "id": 17,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
871 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
872 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
873 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
874 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
875 "name": "SAM-to-BAM",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
876 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
877 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
878 "name": "output1",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
879 "type": "bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
880 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
881 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
882 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
883 "left": 993.6874852180481,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
884 "top": 1144.0174412727356
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
885 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
886 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
887 "HideDatasetActionoutput1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
888 "action_arguments": {},
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
889 "action_type": "HideDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
890 "output_name": "output1"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
891 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
892 "RenameDatasetActionoutput1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
893 "action_arguments": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
894 "newname": "son.bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
895 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
896 "action_type": "RenameDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
897 "output_name": "output1"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
898 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
899 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
900 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
901 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/sam_to_bam/sam_to_bam/1.1.4",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
902 "tool_state": "{\"source\": \"{\\\"index_source\\\": \\\"history\\\", \\\"ref_file\\\": null, \\\"input1\\\": null, \\\"__current_case__\\\": 1}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
903 "tool_version": "1.1.4",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
904 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
905 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
906 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
907 "26": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
908 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
909 "id": 26,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
910 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
911 "input1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
912 "id": 22,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
913 "output_name": "output1"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
914 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
915 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
916 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
917 "name": "sort",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
918 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
919 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
920 "name": "output1",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
921 "type": "bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
922 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
923 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
924 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
925 "left": 1170.684067249298,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
926 "top": 440.02433824539185
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
927 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
928 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
929 "HideDatasetActionoutput1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
930 "action_arguments": {},
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
931 "action_type": "HideDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
932 "output_name": "output1"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
933 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
934 "RenameDatasetActionoutput1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
935 "action_arguments": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
936 "newname": "mother.sorted.bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
937 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
938 "action_type": "RenameDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
939 "output_name": "output1"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
940 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
941 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
942 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
943 "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/samtools_sort/samtools_sort/1.0.2",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
944 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\", \"sort_mode\": \"\\\"\\\"\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
945 "tool_version": "1.0.2",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
946 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
947 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
948 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
949 "27": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
950 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
951 "id": 27,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
952 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
953 "input1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
954 "id": 23,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
955 "output_name": "output1"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
956 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
957 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
958 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
959 "name": "sort",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
960 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
961 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
962 "name": "output1",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
963 "type": "bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
964 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
965 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
966 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
967 "left": 1165.857651233673,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
968 "top": 672.6805882453918
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
969 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
970 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
971 "HideDatasetActionoutput1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
972 "action_arguments": {},
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
973 "action_type": "HideDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
974 "output_name": "output1"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
975 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
976 "RenameDatasetActionoutput1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
977 "action_arguments": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
978 "newname": "father.sorted.bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
979 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
980 "action_type": "RenameDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
981 "output_name": "output1"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
982 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
983 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
984 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
985 "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/samtools_sort/samtools_sort/1.0.2",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
986 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\", \"sort_mode\": \"\\\"\\\"\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
987 "tool_version": "1.0.2",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
988 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
989 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
990 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
991 "28": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
992 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
993 "id": 28,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
994 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
995 "input1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
996 "id": 24,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
997 "output_name": "output1"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
998 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
999 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1000 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1001 "name": "sort",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1002 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1003 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1004 "name": "output1",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1005 "type": "bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1006 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1007 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1008 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1009 "left": 1147.680649280548,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1010 "top": 903.0278172492981
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1011 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1012 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1013 "HideDatasetActionoutput1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1014 "action_arguments": {},
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1015 "action_type": "HideDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1016 "output_name": "output1"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1017 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1018 "RenameDatasetActionoutput1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1019 "action_arguments": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1020 "newname": "daughter.sorted.bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1021 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1022 "action_type": "RenameDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1023 "output_name": "output1"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1024 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1025 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1026 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1027 "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/samtools_sort/samtools_sort/1.0.2",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1028 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\", \"sort_mode\": \"\\\"\\\"\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1029 "tool_version": "1.0.2",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1030 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1031 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1032 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1033 "29": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1034 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1035 "id": 29,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1036 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1037 "input1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1038 "id": 25,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1039 "output_name": "output1"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1040 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1041 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1042 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1043 "name": "sort",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1044 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1045 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1046 "name": "output1",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1047 "type": "bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1048 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1049 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1050 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1051 "left": 1158.6876072883606,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1052 "top": 1123.027817249298
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1053 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1054 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1055 "HideDatasetActionoutput1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1056 "action_arguments": {},
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1057 "action_type": "HideDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1058 "output_name": "output1"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1059 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1060 "RenameDatasetActionoutput1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1061 "action_arguments": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1062 "newname": "son.sorted.bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1063 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1064 "action_type": "RenameDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1065 "output_name": "output1"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1066 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1067 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1068 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1069 "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/samtools_sort/samtools_sort/1.0.2",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1070 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\", \"sort_mode\": \"\\\"\\\"\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1071 "tool_version": "1.0.2",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1072 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1073 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1074 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1075 "30": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1076 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1077 "id": 30,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1078 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1079 "input_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1080 "id": 26,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1081 "output_name": "output1"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1082 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1083 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1084 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1085 "name": "Mark Duplicate reads",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1086 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1087 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1088 "name": "out_file",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1089 "type": "bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1090 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1091 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1092 "name": "html_file",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1093 "type": "html"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1094 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1095 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1096 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1097 "left": 1365.684067249298,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1098 "top": 454.01738023757935
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1099 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1100 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1101 "RenameDatasetActionhtml_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1102 "action_arguments": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1103 "newname": "mother.deduplicated.html"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1104 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1105 "action_type": "RenameDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1106 "output_name": "html_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1107 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1108 "RenameDatasetActionout_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1109 "action_arguments": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1110 "newname": "mother.deduplicated.bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1111 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1112 "action_type": "RenameDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1113 "output_name": "out_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1114 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1115 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1116 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1117 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/picard/rgPicardMarkDups/1.56.0",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1118 "tool_state": "{\"remDups\": \"\\\"True\\\"\", \"assumeSorted\": \"\\\"True\\\"\", \"input_file\": \"null\", \"readRegex\": \"\\\"[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).*\\\"\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"out_prefix\": \"\\\"Dupes Marked\\\"\", \"optDupeDist\": \"\\\"100\\\"\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1119 "tool_version": "1.56.0",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1120 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1121 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1122 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1123 "31": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1124 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1125 "id": 31,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1126 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1127 "input_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1128 "id": 27,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1129 "output_name": "output1"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1130 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1131 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1132 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1133 "name": "Mark Duplicate reads",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1134 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1135 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1136 "name": "out_file",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1137 "type": "bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1138 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1139 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1140 "name": "html_file",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1141 "type": "html"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1142 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1143 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1144 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1145 "left": 1328.357651233673,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1146 "top": 646.6910252571106
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1147 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1148 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1149 "RenameDatasetActionhtml_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1150 "action_arguments": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1151 "newname": "father.deduplicated.html"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1152 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1153 "action_type": "RenameDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1154 "output_name": "html_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1155 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1156 "RenameDatasetActionout_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1157 "action_arguments": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1158 "newname": "father.deduplicated.bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1159 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1160 "action_type": "RenameDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1161 "output_name": "out_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1162 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1163 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1164 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1165 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/picard/rgPicardMarkDups/1.56.0",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1166 "tool_state": "{\"remDups\": \"\\\"True\\\"\", \"assumeSorted\": \"\\\"True\\\"\", \"input_file\": \"null\", \"readRegex\": \"\\\"[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).*\\\"\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"out_prefix\": \"\\\"Dupes Marked\\\"\", \"optDupeDist\": \"\\\"100\\\"\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1167 "tool_version": "1.56.0",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1168 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1169 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1170 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1171 "32": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1172 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1173 "id": 32,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1174 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1175 "input_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1176 "id": 28,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1177 "output_name": "output1"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1178 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1179 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1180 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1181 "name": "Mark Duplicate reads",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1182 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1183 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1184 "name": "out_file",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1185 "type": "bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1186 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1187 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1188 "name": "html_file",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1189 "type": "html"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1190 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1191 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1192 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1193 "left": 1338.6876072883606,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1194 "top": 873.0278172492981
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1195 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1196 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1197 "RenameDatasetActionhtml_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1198 "action_arguments": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1199 "newname": "daughter.deduplicated.html"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1200 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1201 "action_type": "RenameDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1202 "output_name": "html_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1203 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1204 "RenameDatasetActionout_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1205 "action_arguments": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1206 "newname": "daughter.deduplicated.bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1207 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1208 "action_type": "RenameDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1209 "output_name": "out_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1210 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1211 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1212 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1213 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/picard/rgPicardMarkDups/1.56.0",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1214 "tool_state": "{\"remDups\": \"\\\"True\\\"\", \"assumeSorted\": \"\\\"True\\\"\", \"input_file\": \"null\", \"readRegex\": \"\\\"[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).*\\\"\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"out_prefix\": \"\\\"Dupes Marked\\\"\", \"optDupeDist\": \"\\\"100\\\"\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1215 "tool_version": "1.56.0",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1216 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1217 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1218 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1219 "33": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1220 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1221 "id": 33,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1222 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1223 "input_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1224 "id": 29,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1225 "output_name": "output1"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1226 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1227 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1228 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1229 "name": "Mark Duplicate reads",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1230 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1231 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1232 "name": "out_file",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1233 "type": "bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1234 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1235 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1236 "name": "html_file",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1237 "type": "html"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1238 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1239 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1240 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1241 "left": 1354.694565296173,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1242 "top": 1102.0208592414856
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1243 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1244 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1245 "RenameDatasetActionhtml_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1246 "action_arguments": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1247 "newname": "son.deduplicated.html"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1248 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1249 "action_type": "RenameDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1250 "output_name": "html_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1251 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1252 "RenameDatasetActionout_file": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1253 "action_arguments": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1254 "newname": "son.deduplicated.bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1255 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1256 "action_type": "RenameDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1257 "output_name": "out_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1258 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1259 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1260 "tool_errors": null,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1261 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/picard/rgPicardMarkDups/1.56.0",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1262 "tool_state": "{\"remDups\": \"\\\"True\\\"\", \"assumeSorted\": \"\\\"True\\\"\", \"input_file\": \"null\", \"readRegex\": \"\\\"[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).*\\\"\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"out_prefix\": \"\\\"Dupes Marked\\\"\", \"optDupeDist\": \"\\\"100\\\"\"}",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1263 "tool_version": "1.56.0",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1264 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1265 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1266 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1267 "34": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1268 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1269 "id": 34,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1270 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1271 "input1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1272 "id": 30,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1273 "output_name": "out_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1274 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1275 "input2": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1276 "id": 17,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1277 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1278 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1279 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1280 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1281 "name": "LINKYX_mpileup",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1282 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1283 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1284 "name": "output",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1285 "type": "vcf"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1286 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1287 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1288 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1289 "left": 1643.6876072883606,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1290 "top": 465.02433824539185
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1291 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1292 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1293 "RenameDatasetActionoutput": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1294 "action_arguments": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1295 "newname": "mother.vcf"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1296 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1297 "action_type": "RenameDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1298 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1299 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1300 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1301 "tool_errors": null,
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1302 "tool_id": "toolshed.g2.bx.psu.edu/repos/biomonika/linkyx/LINKYX_mpileup/1.1",
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1303 "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\"}",
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1304 "tool_version": "1.1",
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1305 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1306 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1307 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1308 "35": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1309 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1310 "id": 35,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1311 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1312 "input1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1313 "id": 31,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1314 "output_name": "out_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1315 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1316 "input2": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1317 "id": 17,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1318 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1319 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1320 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1321 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1322 "name": "LINKYX_mpileup",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1323 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1324 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1325 "name": "output",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1326 "type": "vcf"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1327 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1328 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1329 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1330 "left": 1653.3577733039856,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1331 "top": 656.1875462532043
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1332 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1333 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1334 "RenameDatasetActionoutput": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1335 "action_arguments": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1336 "newname": "father.vcf"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1337 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1338 "action_type": "RenameDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1339 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1340 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1341 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1342 "tool_errors": null,
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1343 "tool_id": "toolshed.g2.bx.psu.edu/repos/biomonika/linkyx/LINKYX_mpileup/1.1",
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1344 "tool_state": "{\"input2\": \"null\", \"input\": \"null\", \"__rerun_remap_job_id__\": null, \"input1\": \"null\", \"__page__\": 0}",
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1345 "tool_version": "1.1",
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1346 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1347 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1348 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1349 "36": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1350 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1351 "id": 36,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1352 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1353 "input1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1354 "id": 32,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1355 "output_name": "out_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1356 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1357 "input2": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1358 "id": 17,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1359 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1360 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1361 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1362 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1363 "name": "LINKYX_mpileup",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1364 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1365 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1366 "name": "output",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1367 "type": "vcf"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1368 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1369 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1370 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1371 "left": 1652.680649280548,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1372 "top": 873.0278172492981
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1373 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1374 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1375 "RenameDatasetActionoutput": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1376 "action_arguments": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1377 "newname": "daughter.vcf"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1378 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1379 "action_type": "RenameDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1380 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1381 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1382 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1383 "tool_errors": null,
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1384 "tool_id": "toolshed.g2.bx.psu.edu/repos/biomonika/linkyx/LINKYX_mpileup/1.1",
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1385 "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\"}",
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1386 "tool_version": "1.1",
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1387 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1388 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1389 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1390 "37": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1391 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1392 "id": 37,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1393 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1394 "input1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1395 "id": 33,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1396 "output_name": "out_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1397 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1398 "input2": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1399 "id": 17,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1400 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1401 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1402 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1403 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1404 "name": "LINKYX_mpileup",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1405 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1406 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1407 "name": "output",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1408 "type": "vcf"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1409 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1410 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1411 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1412 "left": 1670.684067249298,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1413 "top": 1104.0174412727356
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1414 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1415 "post_job_actions": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1416 "RenameDatasetActionoutput": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1417 "action_arguments": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1418 "newname": "son.vcf"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1419 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1420 "action_type": "RenameDatasetAction",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1421 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1422 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1423 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1424 "tool_errors": null,
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1425 "tool_id": "toolshed.g2.bx.psu.edu/repos/biomonika/linkyx/LINKYX_mpileup/1.1",
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1426 "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\"}",
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1427 "tool_version": "1.1",
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1428 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1429 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1430 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1431 "38": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1432 "annotation": "",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1433 "id": 38,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1434 "input_connections": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1435 "input1": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1436 "id": 17,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1437 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1438 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1439 "input2": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1440 "id": 30,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1441 "output_name": "out_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1442 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1443 "input3": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1444 "id": 34,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1445 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1446 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1447 "input4": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1448 "id": 31,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1449 "output_name": "out_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1450 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1451 "input5": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1452 "id": 35,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1453 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1454 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1455 "input6": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1456 "id": 32,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1457 "output_name": "out_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1458 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1459 "input7": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1460 "id": 36,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1461 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1462 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1463 "input8": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1464 "id": 33,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1465 "output_name": "out_file"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1466 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1467 "input9": {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1468 "id": 37,
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1469 "output_name": "output"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1470 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1471 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1472 "inputs": [],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1473 "name": "LINKYX_X",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1474 "outputs": [
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1475 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1476 "name": "output",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1477 "type": "txt"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1478 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1479 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1480 "name": "output1",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1481 "type": "fasta"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1482 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1483 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1484 "name": "output2",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1485 "type": "bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1486 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1487 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1488 "name": "output3",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1489 "type": "bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1490 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1491 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1492 "name": "output4",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1493 "type": "bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1494 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1495 {
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1496 "name": "output5",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1497 "type": "bam"
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1498 }
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1499 ],
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1500 "position": {
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1501 "left": 1921.517563343048,
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1502 "top": 602.0208592414856
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1503 },
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1504 "post_job_actions": {},
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1505 "tool_errors": null,
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1506 "tool_id": "toolshed.g2.bx.psu.edu/repos/biomonika/linkyx/LINKYX_X/1.1",
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1507 "tool_state": "{\"input2\": \"null\", \"input3\": \"null\", \"input1\": \"null\", \"input6\": \"null\", \"input7\": \"null\", \"input4\": \"null\", \"input5\": \"null\", \"__page__\": 0, \"input8\": \"null\", \"input9\": \"null\", \"__rerun_remap_job_id__\": null}",
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1508 "tool_version": "1.1",
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1509 "type": "tool",
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1510 "user_outputs": []
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1511 }
7
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1512 },
90098d9cb691 workflows updated
biomonika <biomonika@psu.edu>
parents: 0
diff changeset
1513 "uuid": "72f03b6e-5cd7-498c-81f0-5bdf30fc0c36"
0
05c27700e5ca initial commit
biomonika <biomonika@psu.edu>
parents:
diff changeset
1514 }