Mercurial > repos > biomonika > linkyx
comparison Galaxy-Workflow-linkX.ga @ 7:90098d9cb691 default tip
workflows updated
| author | biomonika <biomonika@psu.edu> |
|---|---|
| date | Fri, 20 Feb 2015 18:34:34 -0500 |
| parents | 05c27700e5ca |
| children |
comparison
equal
deleted
inserted
replaced
| 6:3941ba0da626 | 7:90098d9cb691 |
|---|---|
| 1 { | 1 { |
| 2 "a_galaxy_workflow": "true", | 2 "a_galaxy_workflow": "true", |
| 3 "annotation": "", | 3 "annotation": "", |
| 4 "format-version": "0.1", | 4 "format-version": "0.1", |
| 5 "name": "linkX", | 5 "name": "linkX (imported from uploaded file)", |
| 6 "steps": { | 6 "steps": { |
| 7 "0": { | 7 "0": { |
| 8 "annotation": "", | 8 "annotation": "", |
| 9 "id": 0, | 9 "id": 0, |
| 10 "input_connections": {}, | 10 "input_connections": {}, |
| 15 } | 15 } |
| 16 ], | 16 ], |
| 17 "name": "Input dataset", | 17 "name": "Input dataset", |
| 18 "outputs": [], | 18 "outputs": [], |
| 19 "position": { | 19 "position": { |
| 20 "left": 244.16668701171875, | 20 "left": 243.86113023757935, |
| 21 "top": 295 | 21 "top": 294.6944737434387 |
| 22 }, | 22 }, |
| 23 "tool_errors": null, | 23 "tool_errors": null, |
| 24 "tool_id": null, | 24 "tool_id": null, |
| 25 "tool_state": "{\"name\": \"mother_1.fastq\"}", | 25 "tool_state": "{\"name\": \"mother_1.fastq\"}", |
| 26 "tool_version": null, | 26 "tool_version": null, |
| 38 } | 38 } |
| 39 ], | 39 ], |
| 40 "name": "Input dataset", | 40 "name": "Input dataset", |
| 41 "outputs": [], | 41 "outputs": [], |
| 42 "position": { | 42 "position": { |
| 43 "left": 230.16668701171875, | 43 "left": 229.8506932258606, |
| 44 "top": 443 | 44 "top": 442.68058824539185 |
| 45 }, | 45 }, |
| 46 "tool_errors": null, | 46 "tool_errors": null, |
| 47 "tool_id": null, | 47 "tool_id": null, |
| 48 "tool_state": "{\"name\": \"mother_2.fastq\"}", | 48 "tool_state": "{\"name\": \"mother_2.fastq\"}", |
| 49 "tool_version": null, | 49 "tool_version": null, |
| 61 } | 61 } |
| 62 ], | 62 ], |
| 63 "name": "Input dataset", | 63 "name": "Input dataset", |
| 64 "outputs": [], | 64 "outputs": [], |
| 65 "position": { | 65 "position": { |
| 66 "left": 227.16668701171875, | 66 "left": 226.84724473953247, |
| 67 "top": 598 | 67 "top": 597.6805882453918 |
| 68 }, | 68 }, |
| 69 "tool_errors": null, | 69 "tool_errors": null, |
| 70 "tool_id": null, | 70 "tool_id": null, |
| 71 "tool_state": "{\"name\": \"father_1.fastq\"}", | 71 "tool_state": "{\"name\": \"father_1.fastq\"}", |
| 72 "tool_version": null, | 72 "tool_version": null, |
| 84 } | 84 } |
| 85 ], | 85 ], |
| 86 "name": "Input dataset", | 86 "name": "Input dataset", |
| 87 "outputs": [], | 87 "outputs": [], |
| 88 "position": { | 88 "position": { |
| 89 "left": 206.16668701171875, | 89 "left": 205.8576512336731, |
| 90 "top": 688 | 90 "top": 687.6805882453918 |
| 91 }, | 91 }, |
| 92 "tool_errors": null, | 92 "tool_errors": null, |
| 93 "tool_id": null, | 93 "tool_id": null, |
| 94 "tool_state": "{\"name\": \"father_2.fastq\"}", | 94 "tool_state": "{\"name\": \"father_2.fastq\"}", |
| 95 "tool_version": null, | 95 "tool_version": null, |
| 107 } | 107 } |
| 108 ], | 108 ], |
| 109 "name": "Input dataset", | 109 "name": "Input dataset", |
| 110 "outputs": [], | 110 "outputs": [], |
| 111 "position": { | 111 "position": { |
| 112 "left": 199.97918701171875, | 112 "left": 199.65971422195435, |
| 113 "top": 847.3333740234375 | 113 "top": 847.0208592414856 |
| 114 }, | 114 }, |
| 115 "tool_errors": null, | 115 "tool_errors": null, |
| 116 "tool_id": null, | 116 "tool_id": null, |
| 117 "tool_state": "{\"name\": \"daughter_1.fastq\"}", | 117 "tool_state": "{\"name\": \"daughter_1.fastq\"}", |
| 118 "tool_version": null, | 118 "tool_version": null, |
| 130 } | 130 } |
| 131 ], | 131 ], |
| 132 "name": "Input dataset", | 132 "name": "Input dataset", |
| 133 "outputs": [], | 133 "outputs": [], |
| 134 "position": { | 134 "position": { |
| 135 "left": 205.97918701171875, | 135 "left": 205.66667222976685, |
| 136 "top": 966.3333740234375 | 136 "top": 966.0139012336731 |
| 137 }, | 137 }, |
| 138 "tool_errors": null, | 138 "tool_errors": null, |
| 139 "tool_id": null, | 139 "tool_id": null, |
| 140 "tool_state": "{\"name\": \"daughter_2.fastq\"}", | 140 "tool_state": "{\"name\": \"daughter_2.fastq\"}", |
| 141 "tool_version": null, | 141 "tool_version": null, |
| 153 } | 153 } |
| 154 ], | 154 ], |
| 155 "name": "Input dataset", | 155 "name": "Input dataset", |
| 156 "outputs": [], | 156 "outputs": [], |
| 157 "position": { | 157 "position": { |
| 158 "left": 215.97918701171875, | 158 "left": 215.66667222976685, |
| 159 "top": 1110.3333740234375 | 159 "top": 1110.024399280548 |
| 160 }, | 160 }, |
| 161 "tool_errors": null, | 161 "tool_errors": null, |
| 162 "tool_id": null, | 162 "tool_id": null, |
| 163 "tool_state": "{\"name\": \"son_1.fastq\"}", | 163 "tool_state": "{\"name\": \"son_1.fastq\"}", |
| 164 "tool_version": null, | 164 "tool_version": null, |
| 176 } | 176 } |
| 177 ], | 177 ], |
| 178 "name": "Input dataset", | 178 "name": "Input dataset", |
| 179 "outputs": [], | 179 "outputs": [], |
| 180 "position": { | 180 "position": { |
| 181 "left": 206.97918701171875, | 181 "left": 206.67363023757935, |
| 182 "top": 1224.3333740234375 | 182 "top": 1224.0174412727356 |
| 183 }, | 183 }, |
| 184 "tool_errors": null, | 184 "tool_errors": null, |
| 185 "tool_id": null, | 185 "tool_id": null, |
| 186 "tool_state": "{\"name\": \"son_2.fastq\"}", | 186 "tool_state": "{\"name\": \"son_2.fastq\"}", |
| 187 "tool_version": null, | 187 "tool_version": null, |
| 204 "name": "output_file", | 204 "name": "output_file", |
| 205 "type": "fastqsanger" | 205 "type": "fastqsanger" |
| 206 } | 206 } |
| 207 ], | 207 ], |
| 208 "position": { | 208 "position": { |
| 209 "left": 438.16668701171875, | 209 "left": 437.85417222976685, |
| 210 "top": 274 | 210 "top": 273.6875157356262 |
| 211 }, | 211 }, |
| 212 "post_job_actions": { | 212 "post_job_actions": { |
| 213 "HideDatasetActionoutput_file": { | 213 "HideDatasetActionoutput_file": { |
| 214 "action_arguments": {}, | 214 "action_arguments": {}, |
| 215 "action_type": "HideDatasetAction", | 215 "action_type": "HideDatasetAction", |
| 239 "name": "output_file", | 239 "name": "output_file", |
| 240 "type": "fastqsanger" | 240 "type": "fastqsanger" |
| 241 } | 241 } |
| 242 ], | 242 ], |
| 243 "position": { | 243 "position": { |
| 244 "left": 424.16668701171875, | 244 "left": 423.86113023757935, |
| 245 "top": 434 | 245 "top": 433.6875157356262 |
| 246 }, | 246 }, |
| 247 "post_job_actions": { | 247 "post_job_actions": { |
| 248 "HideDatasetActionoutput_file": { | 248 "HideDatasetActionoutput_file": { |
| 249 "action_arguments": {}, | 249 "action_arguments": {}, |
| 250 "action_type": "HideDatasetAction", | 250 "action_type": "HideDatasetAction", |
| 274 "name": "output_file", | 274 "name": "output_file", |
| 275 "type": "fastqsanger" | 275 "type": "fastqsanger" |
| 276 } | 276 } |
| 277 ], | 277 ], |
| 278 "position": { | 278 "position": { |
| 279 "left": 431.16668701171875, | 279 "left": 430.8576512336731, |
| 280 "top": 585 | 280 "top": 584.6945042610168 |
| 281 }, | 281 }, |
| 282 "post_job_actions": { | 282 "post_job_actions": { |
| 283 "HideDatasetActionoutput_file": { | 283 "HideDatasetActionoutput_file": { |
| 284 "action_arguments": {}, | 284 "action_arguments": {}, |
| 285 "action_type": "HideDatasetAction", | 285 "action_type": "HideDatasetAction", |
| 309 "name": "output_file", | 309 "name": "output_file", |
| 310 "type": "fastqsanger" | 310 "type": "fastqsanger" |
| 311 } | 311 } |
| 312 ], | 312 ], |
| 313 "position": { | 313 "position": { |
| 314 "left": 431.16668701171875, | 314 "left": 430.8576512336731, |
| 315 "top": 717 | 315 "top": 716.6910252571106 |
| 316 }, | 316 }, |
| 317 "post_job_actions": { | 317 "post_job_actions": { |
| 318 "HideDatasetActionoutput_file": { | 318 "HideDatasetActionoutput_file": { |
| 319 "action_arguments": {}, | 319 "action_arguments": {}, |
| 320 "action_type": "HideDatasetAction", | 320 "action_type": "HideDatasetAction", |
| 344 "name": "output_file", | 344 "name": "output_file", |
| 345 "type": "fastqsanger" | 345 "type": "fastqsanger" |
| 346 } | 346 } |
| 347 ], | 347 ], |
| 348 "position": { | 348 "position": { |
| 349 "left": 427, | 349 "left": 426.69096422195435, |
| 350 "top": 839.3333740234375 | 350 "top": 839.0173802375793 |
| 351 }, | 351 }, |
| 352 "post_job_actions": { | 352 "post_job_actions": { |
| 353 "HideDatasetActionoutput_file": { | 353 "HideDatasetActionoutput_file": { |
| 354 "action_arguments": {}, | 354 "action_arguments": {}, |
| 355 "action_type": "HideDatasetAction", | 355 "action_type": "HideDatasetAction", |
| 379 "name": "output_file", | 379 "name": "output_file", |
| 380 "type": "fastqsanger" | 380 "type": "fastqsanger" |
| 381 } | 381 } |
| 382 ], | 382 ], |
| 383 "position": { | 383 "position": { |
| 384 "left": 427, | 384 "left": 426.69096422195435, |
| 385 "top": 975.3333740234375 | 385 "top": 975.0243992805481 |
| 386 }, | 386 }, |
| 387 "post_job_actions": { | 387 "post_job_actions": { |
| 388 "HideDatasetActionoutput_file": { | 388 "HideDatasetActionoutput_file": { |
| 389 "action_arguments": {}, | 389 "action_arguments": {}, |
| 390 "action_type": "HideDatasetAction", | 390 "action_type": "HideDatasetAction", |
| 414 "name": "output_file", | 414 "name": "output_file", |
| 415 "type": "fastqsanger" | 415 "type": "fastqsanger" |
| 416 } | 416 } |
| 417 ], | 417 ], |
| 418 "position": { | 418 "position": { |
| 419 "left": 430, | 419 "left": 429.6944432258606, |
| 420 "top": 1096.3333740234375 | 420 "top": 1096.013901233673 |
| 421 }, | 421 }, |
| 422 "post_job_actions": { | 422 "post_job_actions": { |
| 423 "HideDatasetActionoutput_file": { | 423 "HideDatasetActionoutput_file": { |
| 424 "action_arguments": {}, | 424 "action_arguments": {}, |
| 425 "action_type": "HideDatasetAction", | 425 "action_type": "HideDatasetAction", |
| 449 "name": "output_file", | 449 "name": "output_file", |
| 450 "type": "fastqsanger" | 450 "type": "fastqsanger" |
| 451 } | 451 } |
| 452 ], | 452 ], |
| 453 "position": { | 453 "position": { |
| 454 "left": 440, | 454 "left": 439.6944432258606, |
| 455 "top": 1235.3333740234375 | 455 "top": 1235.024399280548 |
| 456 }, | 456 }, |
| 457 "post_job_actions": { | 457 "post_job_actions": { |
| 458 "HideDatasetActionoutput_file": { | 458 "HideDatasetActionoutput_file": { |
| 459 "action_arguments": {}, | 459 "action_arguments": {}, |
| 460 "action_type": "HideDatasetAction", | 460 "action_type": "HideDatasetAction", |
| 492 "name": "assembled_transcripts", | 492 "name": "assembled_transcripts", |
| 493 "type": "fasta" | 493 "type": "fasta" |
| 494 } | 494 } |
| 495 ], | 495 ], |
| 496 "position": { | 496 "position": { |
| 497 "left": 810.166748046875, | 497 "left": 835.8576512336731, |
| 498 "top": 106 | 498 "top": 132.33334398269653 |
| 499 }, | 499 }, |
| 500 "post_job_actions": { | 500 "post_job_actions": { |
| 501 "RenameDatasetActionassembled_transcripts": { | 501 "HideDatasetActionassembled_transcripts": { |
| 502 "action_arguments": { | 502 "action_arguments": {}, |
| 503 "newname": "Trinity.fasta" | 503 "action_type": "HideDatasetAction", |
| 504 }, | |
| 505 "action_type": "RenameDatasetAction", | |
| 506 "output_name": "assembled_transcripts" | 504 "output_name": "assembled_transcripts" |
| 507 } | 505 } |
| 508 }, | 506 }, |
| 509 "tool_errors": null, | 507 "tool_errors": null, |
| 510 "tool_id": "toolshed.g2.bx.psu.edu/repos/bhaas/trinityrnaseq/trinityrnaseq/0.0.1", | 508 "tool_id": "toolshed.g2.bx.psu.edu/repos/biomonika/trinityrnaseq/trinityrnaseq/0.0.1", |
| 511 "tool_state": "{\"__page__\": 0, \"additional_params\": \"{\\\"use_additional\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"inputs\": \"{\\\"paired_or_single\\\": \\\"paired\\\", \\\"library_type\\\": \\\"None\\\", \\\"group_pairs_distance\\\": \\\"500\\\", \\\"left_input\\\": null, \\\"__current_case__\\\": 0, \\\"path_reinforcement_distance\\\": \\\"75\\\", \\\"right_input\\\": null}\", \"__rerun_remap_job_id__\": null, \"JM\": \"\\\"1G\\\"\", \"CPU\": \"\\\"2\\\"\"}", | 509 "tool_state": "{\"__page__\": 0, \"additional_params\": \"{\\\"use_additional\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"inputs\": \"{\\\"paired_or_single\\\": \\\"paired\\\", \\\"library_type\\\": \\\"None\\\", \\\"group_pairs_distance\\\": \\\"500\\\", \\\"left_input\\\": null, \\\"__current_case__\\\": 0, \\\"path_reinforcement_distance\\\": \\\"75\\\", \\\"right_input\\\": null}\", \"__rerun_remap_job_id__\": null, \"JM\": \"\\\"1G\\\"\", \"CPU\": \"\\\"2\\\"\"}", |
| 512 "tool_version": "0.0.1", | 510 "tool_version": "0.0.1", |
| 513 "type": "tool", | 511 "type": "tool", |
| 514 "user_outputs": [] | 512 "user_outputs": [] |
| 515 }, | 513 }, |
| 529 "name": "output", | 527 "name": "output", |
| 530 "type": "fasta" | 528 "type": "fasta" |
| 531 } | 529 } |
| 532 ], | 530 ], |
| 533 "position": { | 531 "position": { |
| 534 "left": 1153.166748046875, | 532 "left": 1139.920151233673, |
| 535 "top": 151.5 | 533 "top": 149.39930772781372 |
| 536 }, | 534 }, |
| 537 "post_job_actions": { | 535 "post_job_actions": {}, |
| 538 "RenameDatasetActionoutput": { | 536 "tool_errors": null, |
| 539 "action_arguments": { | 537 "tool_id": "toolshed.g2.bx.psu.edu/repos/biomonika/linkyx/reformat_trinity_header/1.1", |
| 540 "newname": "Trinity_reformatted.fasta" | |
| 541 }, | |
| 542 "action_type": "RenameDatasetAction", | |
| 543 "output_name": "output" | |
| 544 } | |
| 545 }, | |
| 546 "tool_errors": null, | |
| 547 "tool_id": "reformat_trinity_header", | |
| 548 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\"}", | 538 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\"}", |
| 549 "tool_version": "1.0.0", | 539 "tool_version": "1.1", |
| 550 "type": "tool", | 540 "type": "tool", |
| 551 "user_outputs": [] | 541 "user_outputs": [] |
| 552 }, | 542 }, |
| 553 "18": { | 543 "18": { |
| 554 "annotation": "", | 544 "annotation": "", |
| 574 "name": "output", | 564 "name": "output", |
| 575 "type": "sam" | 565 "type": "sam" |
| 576 } | 566 } |
| 577 ], | 567 ], |
| 578 "position": { | 568 "position": { |
| 579 "left": 790, | 569 "left": 789.6944432258606, |
| 580 "top": 381.3333435058594 | 570 "top": 381.0139012336731 |
| 581 }, | 571 }, |
| 582 "post_job_actions": { | 572 "post_job_actions": { |
| 583 "RenameDatasetActionoutput": { | 573 "RenameDatasetActionoutput": { |
| 584 "action_arguments": { | 574 "action_arguments": { |
| 585 "newname": "mother.sam" | 575 "newname": "mother.sam" |
| 619 "name": "output", | 609 "name": "output", |
| 620 "type": "sam" | 610 "type": "sam" |
| 621 } | 611 } |
| 622 ], | 612 ], |
| 623 "position": { | 613 "position": { |
| 624 "left": 746.6666870117188, | 614 "left": 746.3611302375793, |
| 625 "top": 628 | 615 "top": 627.6805882453918 |
| 626 }, | 616 }, |
| 627 "post_job_actions": { | 617 "post_job_actions": { |
| 628 "RenameDatasetActionoutput": { | 618 "RenameDatasetActionoutput": { |
| 629 "action_arguments": { | 619 "action_arguments": { |
| 630 "newname": "father.sam" | 620 "newname": "father.sam" |
| 664 "name": "output", | 654 "name": "output", |
| 665 "type": "sam" | 655 "type": "sam" |
| 666 } | 656 } |
| 667 ], | 657 ], |
| 668 "position": { | 658 "position": { |
| 669 "left": 735, | 659 "left": 734.6945042610168, |
| 670 "top": 852.3333740234375 | 660 "top": 852.0208592414856 |
| 671 }, | 661 }, |
| 672 "post_job_actions": { | 662 "post_job_actions": { |
| 673 "RenameDatasetActionoutput": { | 663 "RenameDatasetActionoutput": { |
| 674 "action_arguments": { | 664 "action_arguments": { |
| 675 "newname": "daughter.sam" | 665 "newname": "daughter.sam" |
| 709 "name": "output", | 699 "name": "output", |
| 710 "type": "sam" | 700 "type": "sam" |
| 711 } | 701 } |
| 712 ], | 702 ], |
| 713 "position": { | 703 "position": { |
| 714 "left": 771, | 704 "left": 770.6840672492981, |
| 715 "top": 1096.3333740234375 | 705 "top": 1096.013901233673 |
| 716 }, | 706 }, |
| 717 "post_job_actions": { | 707 "post_job_actions": { |
| 718 "RenameDatasetActionoutput": { | 708 "RenameDatasetActionoutput": { |
| 719 "action_arguments": { | 709 "action_arguments": { |
| 720 "newname": "son.sam" | 710 "newname": "son.sam" |
| 750 "name": "output1", | 740 "name": "output1", |
| 751 "type": "bam" | 741 "type": "bam" |
| 752 } | 742 } |
| 753 ], | 743 ], |
| 754 "position": { | 744 "position": { |
| 755 "left": 999, | 745 "left": 998.6874852180481, |
| 756 "top": 421.3333435058594 | 746 "top": 421.0139012336731 |
| 757 }, | 747 }, |
| 758 "post_job_actions": { | 748 "post_job_actions": { |
| 759 "HideDatasetActionoutput1": { | 749 "HideDatasetActionoutput1": { |
| 760 "action_arguments": {}, | 750 "action_arguments": {}, |
| 761 "action_type": "HideDatasetAction", | 751 "action_type": "HideDatasetAction", |
| 796 "name": "output1", | 786 "name": "output1", |
| 797 "type": "bam" | 787 "type": "bam" |
| 798 } | 788 } |
| 799 ], | 789 ], |
| 800 "position": { | 790 "position": { |
| 801 "left": 999.166748046875, | 791 "left": 998.8611912727356, |
| 802 "top": 671 | 792 "top": 670.6840672492981 |
| 803 }, | 793 }, |
| 804 "post_job_actions": { | 794 "post_job_actions": { |
| 805 "HideDatasetActionoutput1": { | 795 "HideDatasetActionoutput1": { |
| 806 "action_arguments": {}, | 796 "action_arguments": {}, |
| 807 "action_type": "HideDatasetAction", | 797 "action_type": "HideDatasetAction", |
| 842 "name": "output1", | 832 "name": "output1", |
| 843 "type": "bam" | 833 "type": "bam" |
| 844 } | 834 } |
| 845 ], | 835 ], |
| 846 "position": { | 836 "position": { |
| 847 "left": 983, | 837 "left": 982.6806492805481, |
| 848 "top": 891.3333740234375 | 838 "top": 891.0139622688293 |
| 849 }, | 839 }, |
| 850 "post_job_actions": { | 840 "post_job_actions": { |
| 851 "HideDatasetActionoutput1": { | 841 "HideDatasetActionoutput1": { |
| 852 "action_arguments": {}, | 842 "action_arguments": {}, |
| 853 "action_type": "HideDatasetAction", | 843 "action_type": "HideDatasetAction", |
| 888 "name": "output1", | 878 "name": "output1", |
| 889 "type": "bam" | 879 "type": "bam" |
| 890 } | 880 } |
| 891 ], | 881 ], |
| 892 "position": { | 882 "position": { |
| 893 "left": 994, | 883 "left": 993.6874852180481, |
| 894 "top": 1144.3333740234375 | 884 "top": 1144.0174412727356 |
| 895 }, | 885 }, |
| 896 "post_job_actions": { | 886 "post_job_actions": { |
| 897 "HideDatasetActionoutput1": { | 887 "HideDatasetActionoutput1": { |
| 898 "action_arguments": {}, | 888 "action_arguments": {}, |
| 899 "action_type": "HideDatasetAction", | 889 "action_type": "HideDatasetAction", |
| 930 "name": "output1", | 920 "name": "output1", |
| 931 "type": "bam" | 921 "type": "bam" |
| 932 } | 922 } |
| 933 ], | 923 ], |
| 934 "position": { | 924 "position": { |
| 935 "left": 1171, | 925 "left": 1170.684067249298, |
| 936 "top": 440.3333435058594 | 926 "top": 440.02433824539185 |
| 937 }, | 927 }, |
| 938 "post_job_actions": { | 928 "post_job_actions": { |
| 939 "HideDatasetActionoutput1": { | 929 "HideDatasetActionoutput1": { |
| 940 "action_arguments": {}, | 930 "action_arguments": {}, |
| 941 "action_type": "HideDatasetAction", | 931 "action_type": "HideDatasetAction", |
| 972 "name": "output1", | 962 "name": "output1", |
| 973 "type": "bam" | 963 "type": "bam" |
| 974 } | 964 } |
| 975 ], | 965 ], |
| 976 "position": { | 966 "position": { |
| 977 "left": 1166.166748046875, | 967 "left": 1165.857651233673, |
| 978 "top": 673 | 968 "top": 672.6805882453918 |
| 979 }, | 969 }, |
| 980 "post_job_actions": { | 970 "post_job_actions": { |
| 981 "HideDatasetActionoutput1": { | 971 "HideDatasetActionoutput1": { |
| 982 "action_arguments": {}, | 972 "action_arguments": {}, |
| 983 "action_type": "HideDatasetAction", | 973 "action_type": "HideDatasetAction", |
| 1014 "name": "output1", | 1004 "name": "output1", |
| 1015 "type": "bam" | 1005 "type": "bam" |
| 1016 } | 1006 } |
| 1017 ], | 1007 ], |
| 1018 "position": { | 1008 "position": { |
| 1019 "left": 1148, | 1009 "left": 1147.680649280548, |
| 1020 "top": 903.3333740234375 | 1010 "top": 903.0278172492981 |
| 1021 }, | 1011 }, |
| 1022 "post_job_actions": { | 1012 "post_job_actions": { |
| 1023 "HideDatasetActionoutput1": { | 1013 "HideDatasetActionoutput1": { |
| 1024 "action_arguments": {}, | 1014 "action_arguments": {}, |
| 1025 "action_type": "HideDatasetAction", | 1015 "action_type": "HideDatasetAction", |
| 1056 "name": "output1", | 1046 "name": "output1", |
| 1057 "type": "bam" | 1047 "type": "bam" |
| 1058 } | 1048 } |
| 1059 ], | 1049 ], |
| 1060 "position": { | 1050 "position": { |
| 1061 "left": 1159, | 1051 "left": 1158.6876072883606, |
| 1062 "top": 1123.3333740234375 | 1052 "top": 1123.027817249298 |
| 1063 }, | 1053 }, |
| 1064 "post_job_actions": { | 1054 "post_job_actions": { |
| 1065 "HideDatasetActionoutput1": { | 1055 "HideDatasetActionoutput1": { |
| 1066 "action_arguments": {}, | 1056 "action_arguments": {}, |
| 1067 "action_type": "HideDatasetAction", | 1057 "action_type": "HideDatasetAction", |
| 1102 "name": "html_file", | 1092 "name": "html_file", |
| 1103 "type": "html" | 1093 "type": "html" |
| 1104 } | 1094 } |
| 1105 ], | 1095 ], |
| 1106 "position": { | 1096 "position": { |
| 1107 "left": 1366, | 1097 "left": 1365.684067249298, |
| 1108 "top": 454.3333435058594 | 1098 "top": 454.01738023757935 |
| 1109 }, | 1099 }, |
| 1110 "post_job_actions": { | 1100 "post_job_actions": { |
| 1111 "RenameDatasetActionhtml_file": { | 1101 "RenameDatasetActionhtml_file": { |
| 1112 "action_arguments": { | 1102 "action_arguments": { |
| 1113 "newname": "mother.deduplicated.html" | 1103 "newname": "mother.deduplicated.html" |
| 1150 "name": "html_file", | 1140 "name": "html_file", |
| 1151 "type": "html" | 1141 "type": "html" |
| 1152 } | 1142 } |
| 1153 ], | 1143 ], |
| 1154 "position": { | 1144 "position": { |
| 1155 "left": 1328.666748046875, | 1145 "left": 1328.357651233673, |
| 1156 "top": 647 | 1146 "top": 646.6910252571106 |
| 1157 }, | 1147 }, |
| 1158 "post_job_actions": { | 1148 "post_job_actions": { |
| 1159 "RenameDatasetActionhtml_file": { | 1149 "RenameDatasetActionhtml_file": { |
| 1160 "action_arguments": { | 1150 "action_arguments": { |
| 1161 "newname": "father.deduplicated.html" | 1151 "newname": "father.deduplicated.html" |
| 1198 "name": "html_file", | 1188 "name": "html_file", |
| 1199 "type": "html" | 1189 "type": "html" |
| 1200 } | 1190 } |
| 1201 ], | 1191 ], |
| 1202 "position": { | 1192 "position": { |
| 1203 "left": 1339, | 1193 "left": 1338.6876072883606, |
| 1204 "top": 873.3333740234375 | 1194 "top": 873.0278172492981 |
| 1205 }, | 1195 }, |
| 1206 "post_job_actions": { | 1196 "post_job_actions": { |
| 1207 "RenameDatasetActionhtml_file": { | 1197 "RenameDatasetActionhtml_file": { |
| 1208 "action_arguments": { | 1198 "action_arguments": { |
| 1209 "newname": "daughter.deduplicated.html" | 1199 "newname": "daughter.deduplicated.html" |
| 1246 "name": "html_file", | 1236 "name": "html_file", |
| 1247 "type": "html" | 1237 "type": "html" |
| 1248 } | 1238 } |
| 1249 ], | 1239 ], |
| 1250 "position": { | 1240 "position": { |
| 1251 "left": 1355, | 1241 "left": 1354.694565296173, |
| 1252 "top": 1102.3333740234375 | 1242 "top": 1102.0208592414856 |
| 1253 }, | 1243 }, |
| 1254 "post_job_actions": { | 1244 "post_job_actions": { |
| 1255 "RenameDatasetActionhtml_file": { | 1245 "RenameDatasetActionhtml_file": { |
| 1256 "action_arguments": { | 1246 "action_arguments": { |
| 1257 "newname": "son.deduplicated.html" | 1247 "newname": "son.deduplicated.html" |
| 1294 "name": "output", | 1284 "name": "output", |
| 1295 "type": "vcf" | 1285 "type": "vcf" |
| 1296 } | 1286 } |
| 1297 ], | 1287 ], |
| 1298 "position": { | 1288 "position": { |
| 1299 "left": 1644, | 1289 "left": 1643.6876072883606, |
| 1300 "top": 465.3333435058594 | 1290 "top": 465.02433824539185 |
| 1301 }, | 1291 }, |
| 1302 "post_job_actions": { | 1292 "post_job_actions": { |
| 1303 "RenameDatasetActionoutput": { | 1293 "RenameDatasetActionoutput": { |
| 1304 "action_arguments": { | 1294 "action_arguments": { |
| 1305 "newname": "mother.vcf" | 1295 "newname": "mother.vcf" |
| 1307 "action_type": "RenameDatasetAction", | 1297 "action_type": "RenameDatasetAction", |
| 1308 "output_name": "output" | 1298 "output_name": "output" |
| 1309 } | 1299 } |
| 1310 }, | 1300 }, |
| 1311 "tool_errors": null, | 1301 "tool_errors": null, |
| 1312 "tool_id": "LINKYX_mpileup", | 1302 "tool_id": "toolshed.g2.bx.psu.edu/repos/biomonika/linkyx/LINKYX_mpileup/1.1", |
| 1313 "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\"}", | 1303 "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\"}", |
| 1314 "tool_version": "1.0.0", | 1304 "tool_version": "1.1", |
| 1315 "type": "tool", | 1305 "type": "tool", |
| 1316 "user_outputs": [] | 1306 "user_outputs": [] |
| 1317 }, | 1307 }, |
| 1318 "35": { | 1308 "35": { |
| 1319 "annotation": "", | 1309 "annotation": "", |
| 1335 "name": "output", | 1325 "name": "output", |
| 1336 "type": "vcf" | 1326 "type": "vcf" |
| 1337 } | 1327 } |
| 1338 ], | 1328 ], |
| 1339 "position": { | 1329 "position": { |
| 1340 "left": 1653.666748046875, | 1330 "left": 1653.3577733039856, |
| 1341 "top": 656.5 | 1331 "top": 656.1875462532043 |
| 1342 }, | 1332 }, |
| 1343 "post_job_actions": { | 1333 "post_job_actions": { |
| 1344 "RenameDatasetActionoutput": { | 1334 "RenameDatasetActionoutput": { |
| 1345 "action_arguments": { | 1335 "action_arguments": { |
| 1346 "newname": "father.vcf" | 1336 "newname": "father.vcf" |
| 1348 "action_type": "RenameDatasetAction", | 1338 "action_type": "RenameDatasetAction", |
| 1349 "output_name": "output" | 1339 "output_name": "output" |
| 1350 } | 1340 } |
| 1351 }, | 1341 }, |
| 1352 "tool_errors": null, | 1342 "tool_errors": null, |
| 1353 "tool_id": "LINKYX_mpileup", | 1343 "tool_id": "toolshed.g2.bx.psu.edu/repos/biomonika/linkyx/LINKYX_mpileup/1.1", |
| 1354 "tool_state": "{\"input2\": \"null\", \"input\": \"null\", \"__rerun_remap_job_id__\": null, \"input1\": \"null\", \"__page__\": 0}", | 1344 "tool_state": "{\"input2\": \"null\", \"input\": \"null\", \"__rerun_remap_job_id__\": null, \"input1\": \"null\", \"__page__\": 0}", |
| 1355 "tool_version": "1.0.0", | 1345 "tool_version": "1.1", |
| 1356 "type": "tool", | 1346 "type": "tool", |
| 1357 "user_outputs": [] | 1347 "user_outputs": [] |
| 1358 }, | 1348 }, |
| 1359 "36": { | 1349 "36": { |
| 1360 "annotation": "", | 1350 "annotation": "", |
| 1376 "name": "output", | 1366 "name": "output", |
| 1377 "type": "vcf" | 1367 "type": "vcf" |
| 1378 } | 1368 } |
| 1379 ], | 1369 ], |
| 1380 "position": { | 1370 "position": { |
| 1381 "left": 1653, | 1371 "left": 1652.680649280548, |
| 1382 "top": 873.3333740234375 | 1372 "top": 873.0278172492981 |
| 1383 }, | 1373 }, |
| 1384 "post_job_actions": { | 1374 "post_job_actions": { |
| 1385 "RenameDatasetActionoutput": { | 1375 "RenameDatasetActionoutput": { |
| 1386 "action_arguments": { | 1376 "action_arguments": { |
| 1387 "newname": "daughter.vcf" | 1377 "newname": "daughter.vcf" |
| 1389 "action_type": "RenameDatasetAction", | 1379 "action_type": "RenameDatasetAction", |
| 1390 "output_name": "output" | 1380 "output_name": "output" |
| 1391 } | 1381 } |
| 1392 }, | 1382 }, |
| 1393 "tool_errors": null, | 1383 "tool_errors": null, |
| 1394 "tool_id": "LINKYX_mpileup", | 1384 "tool_id": "toolshed.g2.bx.psu.edu/repos/biomonika/linkyx/LINKYX_mpileup/1.1", |
| 1395 "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\"}", | 1385 "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\"}", |
| 1396 "tool_version": "1.0.0", | 1386 "tool_version": "1.1", |
| 1397 "type": "tool", | 1387 "type": "tool", |
| 1398 "user_outputs": [] | 1388 "user_outputs": [] |
| 1399 }, | 1389 }, |
| 1400 "37": { | 1390 "37": { |
| 1401 "annotation": "", | 1391 "annotation": "", |
| 1417 "name": "output", | 1407 "name": "output", |
| 1418 "type": "vcf" | 1408 "type": "vcf" |
| 1419 } | 1409 } |
| 1420 ], | 1410 ], |
| 1421 "position": { | 1411 "position": { |
| 1422 "left": 1671, | 1412 "left": 1670.684067249298, |
| 1423 "top": 1104.3333740234375 | 1413 "top": 1104.0174412727356 |
| 1424 }, | 1414 }, |
| 1425 "post_job_actions": { | 1415 "post_job_actions": { |
| 1426 "RenameDatasetActionoutput": { | 1416 "RenameDatasetActionoutput": { |
| 1427 "action_arguments": { | 1417 "action_arguments": { |
| 1428 "newname": "son.vcf" | 1418 "newname": "son.vcf" |
| 1430 "action_type": "RenameDatasetAction", | 1420 "action_type": "RenameDatasetAction", |
| 1431 "output_name": "output" | 1421 "output_name": "output" |
| 1432 } | 1422 } |
| 1433 }, | 1423 }, |
| 1434 "tool_errors": null, | 1424 "tool_errors": null, |
| 1435 "tool_id": "LINKYX_mpileup", | 1425 "tool_id": "toolshed.g2.bx.psu.edu/repos/biomonika/linkyx/LINKYX_mpileup/1.1", |
| 1436 "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\"}", | 1426 "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\"}", |
| 1437 "tool_version": "1.0.0", | 1427 "tool_version": "1.1", |
| 1438 "type": "tool", | 1428 "type": "tool", |
| 1439 "user_outputs": [] | 1429 "user_outputs": [] |
| 1440 }, | 1430 }, |
| 1441 "38": { | 1431 "38": { |
| 1442 "annotation": "", | 1432 "annotation": "", |
| 1506 "name": "output5", | 1496 "name": "output5", |
| 1507 "type": "bam" | 1497 "type": "bam" |
| 1508 } | 1498 } |
| 1509 ], | 1499 ], |
| 1510 "position": { | 1500 "position": { |
| 1511 "left": 1921.83349609375, | 1501 "left": 1921.517563343048, |
| 1512 "top": 602.3333740234375 | 1502 "top": 602.0208592414856 |
| 1513 }, | 1503 }, |
| 1514 "post_job_actions": {}, | 1504 "post_job_actions": {}, |
| 1515 "tool_errors": null, | 1505 "tool_errors": null, |
| 1516 "tool_id": "LINKYX_X", | 1506 "tool_id": "toolshed.g2.bx.psu.edu/repos/biomonika/linkyx/LINKYX_X/1.1", |
| 1517 "tool_state": "{\"input2\": \"null\", \"input3\": \"null\", \"input1\": \"null\", \"input6\": \"null\", \"input7\": \"null\", \"input4\": \"null\", \"input5\": \"null\", \"__page__\": 0, \"input8\": \"null\", \"input9\": \"null\", \"__rerun_remap_job_id__\": null}", | 1507 "tool_state": "{\"input2\": \"null\", \"input3\": \"null\", \"input1\": \"null\", \"input6\": \"null\", \"input7\": \"null\", \"input4\": \"null\", \"input5\": \"null\", \"__page__\": 0, \"input8\": \"null\", \"input9\": \"null\", \"__rerun_remap_job_id__\": null}", |
| 1518 "tool_version": "1.0.0", | 1508 "tool_version": "1.1", |
| 1519 "type": "tool", | 1509 "type": "tool", |
| 1520 "user_outputs": [] | 1510 "user_outputs": [] |
| 1521 } | 1511 } |
| 1522 } | 1512 }, |
| 1513 "uuid": "72f03b6e-5cd7-498c-81f0-5bdf30fc0c36" | |
| 1523 } | 1514 } |