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author biomonika
date Tue, 17 Feb 2015 21:59:51 -0500
parents 05c27700e5ca
children 0979980b5bdc
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1:4c5de3a2c54e 2:0d8315be76b7
1 LinkYX 1 LinkYX
2 2
3 Fully automated pipeline for detection of sex linked genes using RNA-Seq data 3 Fully automated pipeline for detection of sex linked genes using RNA-Seq data
4 bitbucket.org/biomonika/linkyx
5 4
6 Please install following dependencies from toolshed: 5 The installation is described on the project wiki page:
7 toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.0.4 6 https://bitbucket.org/biomonika/linkyx/wiki/Home
8 toolshed.g2.bx.psu.edu/repos/bhaas/trinityrnaseq/trinityrnaseq/0.0.1 7
9 toolshed.g2.bx.psu.edu/repos/devteam/bwa_wrappers/bwa_wrapper/1.2.3 8 In order to install additional tools used in the workflow, please install following repository suite definition to the Galaxy:
10 toolshed.g2.bx.psu.edu/repos/devteam/sam_to_bam/sam_to_bam/1.1.4 9 https://testtoolshed.g2.bx.psu.edu/view/marten/suite_linkyx_bundle_0_1
11 toolshed.g2.bx.psu.edu/repos/iuc/samtools_sort/samtools_sort/1.0.2 10
12 toolshed.g2.bx.psu.edu/repos/devteam/picard/rgPicardMarkDups/1.56.0 11 Code repositary: bitbucket.org/biomonika/linkyx
13 12
14 If you have any questions, please use following email address: biomonika@psu.edu 13 If you have any questions, please use following email address: biomonika@psu.edu