Mercurial > repos > biomonika > linkyx
diff README.txt @ 2:0d8315be76b7
Uploaded
| author | biomonika |
|---|---|
| date | Tue, 17 Feb 2015 21:59:51 -0500 |
| parents | 05c27700e5ca |
| children | 0979980b5bdc |
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--- a/README.txt Sun Sep 07 23:12:26 2014 -0400 +++ b/README.txt Tue Feb 17 21:59:51 2015 -0500 @@ -1,14 +1,13 @@ LinkYX Fully automated pipeline for detection of sex linked genes using RNA-Seq data -bitbucket.org/biomonika/linkyx + +The installation is described on the project wiki page: +https://bitbucket.org/biomonika/linkyx/wiki/Home -Please install following dependencies from toolshed: -toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.0.4 -toolshed.g2.bx.psu.edu/repos/bhaas/trinityrnaseq/trinityrnaseq/0.0.1 -toolshed.g2.bx.psu.edu/repos/devteam/bwa_wrappers/bwa_wrapper/1.2.3 -toolshed.g2.bx.psu.edu/repos/devteam/sam_to_bam/sam_to_bam/1.1.4 -toolshed.g2.bx.psu.edu/repos/iuc/samtools_sort/samtools_sort/1.0.2 -toolshed.g2.bx.psu.edu/repos/devteam/picard/rgPicardMarkDups/1.56.0 +In order to install additional tools used in the workflow, please install following repository suite definition to the Galaxy: +https://testtoolshed.g2.bx.psu.edu/view/marten/suite_linkyx_bundle_0_1 + +Code repositary: bitbucket.org/biomonika/linkyx If you have any questions, please use following email address: biomonika@psu.edu \ No newline at end of file