Mercurial > repos > biomonika > linkyx

diff reformat_trinity_header.xml @ 1:4c5de3a2c54e

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
toolshed2
author biomonika <biomonika@psu.edu>
date Sun, 07 Sep 2014 23:12:26 -0400
parents 05c27700e5ca
children
line wrap: on
line diff
--- a/reformat_trinity_header.xml	Thu Sep 04 18:24:19 2014 -0400
+++ b/reformat_trinity_header.xml	Sun Sep 07 23:12:26 2014 -0400
@@ -1,5 +1,10 @@
 <tool id="reformat_trinity_header" name="reformat_trinity_header">
       <description>Reformat Trinity header</description>
+      <requirements>
+        <requirement type="set_environment">LINKYX_PATH</requirement>
+        <requirement type="set_environment">SAMTOOLS</requirement>
+        <requirement type="package" version="0.1.19">samtools</requirement>
+      </requirements>
       <command interpreter="bash">reformat_trinity_header.sh $output $input1</command>
       <inputs>
         <param format="fasta" name="input1" type="data" label="Trinity.fasta"/>