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view LINKYX_reformat_trinity_header.sh @ 7:90098d9cb691 default tip

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workflows updated
author biomonika <biomonika@psu.edu>
date Fri, 20 Feb 2015 18:34:34 -0500
parents 0d8315be76b7
children
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#!/bin/bash

results=$1 #reformatted fasta sequence written here
trinity_fasta=${2}

perl -pe 's/(>[\S]+).+/$1/' $trinity_fasta >$results
samtools faidx $results