Mercurial > repos > bjoern-gruening > repeat_masker
view readme.txt @ 1:f8f1a3878edd draft default tip
0.1.1 version, prevent a crash if no repeat is found. Thanks to Simon Guest
author | bjoern-gruening |
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date | Fri, 01 Feb 2013 03:29:37 -0500 |
parents | 13df908a02b0 |
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Galaxy wrapper for RepeatMasker ===================================== This wrapper is copyright 2013 by Björn Grüning. This is a wrapper for the command line tool of RepeatMasker from the Institute for Systems Biology. http://www.repeatmasker.org/ Smit, AFA, Hubley, R & Green, P. RepeatMasker Open-3.0. 1996-2010 <http://www.repeatmasker.org>. Additional Information: Using RepeatMasker to identify repetitive elements in genomic sequences. http://www.ncbi.nlm.nih.gov/pubmed/19274634 Installation ============ To install RepeatMasker, please use the following instructions: http://www.repeatmasker.org/RMDownload.html To install the wrapper copy the file RepeatMasker.xml in the galaxy tools folder and modify the tools_conf.xml file to make the tool available to Galaxy. Add a line like the following: <tool file="RepeatMasker/RepeatMasker.xml" /> History ======= v0.1 - Initial public release v0.1.1 - patch from Simon Guest, to create empty files if no repeat is found Wrapper Licence (MIT/BSD style) =============================== Permission to use, copy, modify, and distribute this software and its documentation with or without modifications and for any purpose and without fee is hereby granted, provided that any copyright notices appear in all copies and that both those copyright notices and this permission notice appear in supporting documentation, and that the names of the contributors or copyright holders not be used in advertising or publicity pertaining to distribution of the software without specific prior permission. THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE.