Mercurial > repos > bobbledavidson > beagle4_0

changeset 3:9e8de4ce2a3c draft

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Added help notes to xml wrapper
author bobbledavidson
date Wed, 08 Jul 2015 11:08:07 -0400
parents e7e5432588ea
children b970ba62539e
files beagle4.xml
diffstat 1 files changed, 13 insertions(+), 0 deletions(-) [+]
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--- a/beagle4.xml	Wed Jul 08 10:19:11 2015 -0400
+++ b/beagle4.xml	Wed Jul 08 11:08:07 2015 -0400
@@ -54,6 +54,19 @@
 
 <help>
 
+For a full guide, go to the Beagle4.0 documentation here: http://faculty.washington.edu/browning/beagle/beagle.03Mar15.pdf
+
+This wrapper allows for the selection of either a Genotype (gt) file, a Genotype Likelihood (gl) file or a Genotype (gt) plus Reference file as per the example usage here: http://faculty.washington.edu/browning/beagle/run.beagle.r1399.example
+
+The only parameters currently exposed by this wrapper are impute-its and phase-its which both have default of 5. Please feel free to request more parameters to be made available by contacting bobbledavidson @ github.
+
+Test data is available via the GitHub page: https://github.com/bobbledavidson/Beagle4Galaxy
+
+Important note:
+The creator of the Galaxy wrapper is not the same as the creator of the Beagle4.0 tool. All credit for the tool's abilities should be acknowledged using the following citation:
+
+S R Browning and B L Browning (2007) Rapid and accurate haplotype phasing and missing data inference for whole genome association studies by use of localized haplotype clustering. Am J Hum Genet 81:1084-97. doi:10.1086/521987
+
 </help>