Mercurial > repos > boris > package_ape_3_0
comparison tool_dependencies.xml @ 0:423395d792df draft default tip
Uploaded xml
author | boris |
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date | Mon, 03 Feb 2014 12:57:17 -0500 |
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-1:000000000000 | 0:423395d792df |
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1 <?xml version="1.0"?> | |
2 <tool_dependency> | |
3 <package name="R" version="2.15.0"> | |
4 <repository changeset_revision="7fb1a5b1b6ba" name="package_r_2_15_0" owner="boris" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | |
5 </package> | |
6 <package name="ape" version="3.0-8"> | |
7 <install version="1.0"> | |
8 <actions> | |
9 <action type="download_by_url">http://cran.at.r-project.org/src/contrib/Archive/ape/ape_3.0-8.tar.gz</action> | |
10 <action type="set_environment_for_install"> | |
11 <repository changeset_revision="7fb1a5b1b6ba" name="package_r_2_15_0" owner="boris" toolshed="http://toolshed.g2.bx.psu.edu"> | |
12 <package name="R" version="2.15.0" /> | |
13 </repository> | |
14 </action> | |
15 <action type="make_directory">$INSTALL_DIR</action> | |
16 <action type="shell_command"> export PATH=$PATH && export R_HOME=$R_HOME && export R_LIBS=$R_LIBS && R CMD INSTALL . -l $INSTALL_DIR </action> | |
17 <action type="set_environment"> | |
18 <environment_variable action="prepend_to" name="PATH">$ENV[PATH]</environment_variable> | |
19 <environment_variable action="prepend_to" name="R_HOME">$ENV[R_HOME]</environment_variable> | |
20 <environment_variable action="prepend_to" name="R_LIBS">$ENV[R_LIBS]</environment_variable> | |
21 <environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR</environment_variable> | |
22 </action> | |
23 </actions> | |
24 </install> | |
25 <readme> ape provides functions for reading, writing, plotting, and manipulating phylogenetic trees</readme> | |
26 </package> | |
27 </tool_dependency> |