Mercurial > repos > boris > package_ape_3_0
view tool_dependencies.xml @ 0:423395d792df draft default tip
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author | boris |
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date | Mon, 03 Feb 2014 12:57:17 -0500 |
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<?xml version="1.0"?> <tool_dependency> <package name="R" version="2.15.0"> <repository changeset_revision="7fb1a5b1b6ba" name="package_r_2_15_0" owner="boris" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> </package> <package name="ape" version="3.0-8"> <install version="1.0"> <actions> <action type="download_by_url">http://cran.at.r-project.org/src/contrib/Archive/ape/ape_3.0-8.tar.gz</action> <action type="set_environment_for_install"> <repository changeset_revision="7fb1a5b1b6ba" name="package_r_2_15_0" owner="boris" toolshed="http://toolshed.g2.bx.psu.edu"> <package name="R" version="2.15.0" /> </repository> </action> <action type="make_directory">$INSTALL_DIR</action> <action type="shell_command"> export PATH=$PATH && export R_HOME=$R_HOME && export R_LIBS=$R_LIBS && R CMD INSTALL . -l $INSTALL_DIR </action> <action type="set_environment"> <environment_variable action="prepend_to" name="PATH">$ENV[PATH]</environment_variable> <environment_variable action="prepend_to" name="R_HOME">$ENV[R_HOME]</environment_variable> <environment_variable action="prepend_to" name="R_LIBS">$ENV[R_LIBS]</environment_variable> <environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR</environment_variable> </action> </actions> </install> <readme> ape provides functions for reading, writing, plotting, and manipulating phylogenetic trees</readme> </package> </tool_dependency>