Mercurial > repos > bornea > filter_fasta
diff filter_fasta.py @ 14:d66c62c6c56f draft
Uploaded
author | bornea |
---|---|
date | Wed, 24 Aug 2016 13:00:03 -0400 |
parents | 05d48b118f81 |
children |
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--- a/filter_fasta.py Tue Aug 16 20:48:46 2016 -0400 +++ b/filter_fasta.py Wed Aug 24 13:00:03 2016 -0400 @@ -34,10 +34,13 @@ break cnt += 1 header = data[header_start] - if "Accession Number" in header: - prot_start = header.index("Accession Number") - elif "Accession" in header: - prot_start = header.index("Accession") + for i in header: + if i == "Accession": + prot_start = header.index("Accession") + if i == "Accession Number": + prot_start = header.index("Accession Number") + if i == "Main Accession": + prot_start = header.index("Main Accession") proteins = [] for protein in data[header_start:]: if len(protein) > prot_start: