Mercurial > repos > bornea > filter_fasta

changeset 14:d66c62c6c56f draft

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Uploaded
author bornea
date Wed, 24 Aug 2016 13:00:03 -0400
parents 55990dea42fb
children 3833aebf8d3a
files filter_fasta.py
diffstat 1 files changed, 7 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/filter_fasta.py	Tue Aug 16 20:48:46 2016 -0400
+++ b/filter_fasta.py	Wed Aug 24 13:00:03 2016 -0400
@@ -34,10 +34,13 @@
             break
         cnt += 1
     header = data[header_start]
-    if "Accession Number" in header:
-        prot_start = header.index("Accession Number")
-    elif "Accession" in header:
-        prot_start = header.index("Accession")
+    for i in header:
+        if i == "Accession":
+            prot_start = header.index("Accession")
+        if i == "Accession Number":
+            prot_start = header.index("Accession Number")
+        if i == "Main Accession":
+            prot_start = header.index("Main Accession")
     proteins = []
     for protein in data[header_start:]:
         if len(protein) > prot_start: