Mercurial > repos > bornea > filter_fasta

changeset 4:489b560129c8 draft

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Uploaded
author bornea
date Sat, 06 Aug 2016 16:57:14 -0400
parents 533e887cc13b
children af454e5a9ef5
files filter_fasta.xml
diffstat 1 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/filter_fasta.xml	Thu Aug 04 16:09:37 2016 -0400
+++ b/filter_fasta.xml	Sat Aug 06 16:57:14 2016 -0400
@@ -1,12 +1,12 @@
 <tool id="filter_fasta" name="Filter FASTA">
   <description></description>
-  <command interpreter="python">filter_fasta.py $input1 $input2 $output</command>
+  <command interpreter="python">filter_fasta.py $fasta_input $scaf_input $fasta_output</command>
   <inputs>
-    <param format="txt" name="input1" type="data" label="FASTA Database"/>
-    <param format="txt" name="input2" type="data" label="Scaffold Report"/>
+    <param format="fasta" name="fasta_input" type="data" label="FASTA Database"/>
+    <param format="txt" name="scaf_input" type="data" label="Scaffold Report"/>
   </inputs>
   <outputs>
-    <data format="fasta" name="output" label="Filtered FASTA"/>    
+    <data format="fasta" name="fasta_output" label="Filtered FASTA"/>    
   </outputs>
   <stdio>
     <regex match="Error|error"