Mercurial > repos > bornea > merge_scaffold
changeset 10:90045bffffaa draft
Uploaded
| author | bornea |
|---|---|
| date | Wed, 03 Aug 2016 15:22:44 -0400 |
| parents | abe608eb4aa4 |
| children | 4882e93ede2d |
| files | MergeFiles.py |
| diffstat | 1 files changed, 5 insertions(+), 1 deletions(-) [+] |
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--- a/MergeFiles.py Wed Aug 03 15:15:54 2016 -0400 +++ b/MergeFiles.py Wed Aug 03 15:22:44 2016 -0400 @@ -7,16 +7,20 @@ import sys import urllib2 import os.path -import pandas +import pandas as pd ####################################################################################### ## Description: ## # This program will merge either 2 or 3 scaffold # sample report files together ## Required input: ## infile1 = sys.argv[1] # scaffold report #1 -- filename +print infile1 infile2 = sys.argv[2] # scaffold report #2 -- filename +print infile2 infile3 = sys.argv[3] # scaffold report #3 -- filename or "False" +print infile3 baitfile = sys.argv[4] # Bait file -- filename +print baitfile outfile = sys.argv[5] # output filename class ScaffoldReturn(object): def __init__(self, getdata, getproteins, getheader):