Mercurial > repos > bornea > saint_bubblebeam
changeset 9:9617d82034c6 draft
Uploaded
| author | bornea |
|---|---|
| date | Thu, 19 Nov 2015 10:48:55 -0500 |
| parents | 318185488e49 |
| children | 79285a7acfbf |
| files | Bubblebeam_For_SAINT_wrapper.py |
| diffstat | 1 files changed, 9 insertions(+), 7 deletions(-) [+] |
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--- a/Bubblebeam_For_SAINT_wrapper.py Thu Nov 19 10:43:31 2015 -0500 +++ b/Bubblebeam_For_SAINT_wrapper.py Thu Nov 19 10:48:55 2015 -0500 @@ -10,12 +10,14 @@ label = sys.argv[5] cutoff = sys.argv[6] mq_sc = sys.argv[7] -output_file_name = sys.argv[8] -bub_zoom_NSAF = sys.argv[9] -bub_zoom_SAINT =sys.argv[10] -bub_SAINT = sys.argv[11] -bub_NSAF = sys.argv[12] -ins_path =sys.argv[13] +inc_file = sys.argv[8] +exc_file = sys.argv[9] +output_file_name = sys.argv[10] +bub_zoom_NSAF = sys.argv[11] +bub_zoom_SAINT =sys.argv[12] +bub_SAINT = sys.argv[13] +bub_NSAF = sys.argv[14] +ins_path =sys.argv[15] if crapome == "None": crapome = "FALSE" @@ -26,7 +28,7 @@ elif label == "true": label = "TRUE" -cmd = r"Rscript "+ str(ins_path) + r"/bubbles_v9_NSAF_natural_log.R " + str(list_file) + r" " + str(prey_file) + r" " + str(crapome) + r" " + str(color) + r" " + str(label) + r" " + str(cutoff) + r" " + str(mq_sc) +cmd = r"Rscript "+ str(ins_path) + r"/bubbles_v9_NSAF_natural_log.R " + str(list_file) + r" " + str(prey_file) + r" " + str(crapome) + r" " + str(color) + r" " + str(label) + r" " + str(cutoff) + r" " + str(mq_sc) + r" " + str(inc_file) + r" " + str(exc_file) os.system(cmd) time.sleep(3)