Mercurial > repos > brenninc > data_manager_all_fasta_path
comparison data_manager/all_fasta_by_path_data_manager.xml @ 0:33e7d904fdc3 draft default tip
Uploaded original version
author | brenninc |
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date | Sat, 07 May 2016 16:29:35 -0400 |
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-1:000000000000 | 0:33e7d904fdc3 |
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1 <tool id="all_fasta_by_path_manager" name="all_fasta by path data manager" tool_type="manage_data" version="0.0.1"> | |
2 <description>path inputer</description> | |
3 <command interpreter="python"> | |
4 path_name_value_key_manager.py | |
5 --value "${value}" | |
6 --dbkey "${dbkey}" | |
7 --name "${name}" | |
8 --path "${path}" | |
9 --data_table_name "all_fasta" | |
10 --json_output_file "${json_output_file}" | |
11 </command> | |
12 <inputs> | |
13 <param name="value" type="text" value="" label="value field for the entry. Defaults to name if left blank." /> | |
14 <param name="dbkey" type="text" value="" label="dbkey field for the entry. Defaults to value if left blank." /> | |
15 <param name="name" type="text" value="" label="name field for the entry. Defaults to the file name from path if left blank." /> | |
16 <param name="path" type="text" value="" label="path field for the entry" /> | |
17 </inputs> | |
18 <outputs> | |
19 <data name="json_output_file" format="data_manager_json"/> | |
20 </outputs> | |
21 | |
22 <help> | |
23 Adds a server path to the all_fasta data table. | |
24 | |
25 The tool will check the path exists but NOT check that it holds the expected data type. | |
26 | |
27 If name is not provided the filename from path less the extension is used. | |
28 | |
29 If value is not provided, the name will be used (or its default) | |
30 | |
31 If dbkey is not provided, the value will be used (or its default) | |
32 | |
33 </help> | |
34 <citations> | |
35 </citations> | |
36 | |
37 </tool> |