view data_manager/all_fasta_by_path_data_manager.xml @ 0:33e7d904fdc3 draft default tip

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<tool id="all_fasta_by_path_manager" name="all_fasta by path data manager" tool_type="manage_data" version="0.0.1">
    <description>path inputer</description>
    <command interpreter="python">
        path_name_value_key_manager.py 
        --value "${value}" 
        --dbkey "${dbkey}" 
        --name "${name}" 
        --path "${path}" 
        --data_table_name "all_fasta" 
        --json_output_file "${json_output_file}"
    </command>
    <inputs>
        <param name="value" type="text" value="" label="value field for the entry.  Defaults to name if left blank." />
        <param name="dbkey" type="text" value="" label="dbkey field for the entry.  Defaults to value if left blank." />
        <param name="name" type="text" value="" label="name field for the entry. Defaults to the file name from path if left blank." />
        <param name="path" type="text" value="" label="path field for the entry" />
    </inputs>
    <outputs>
        <data name="json_output_file" format="data_manager_json"/>
    </outputs>

    <help>
Adds a server path to the all_fasta data table.

The tool will check the path exists but NOT check that it holds the expected data type.

If name is not provided the filename from path less the extension is used.

If value is not provided, the name will be used (or its default)

If dbkey is not provided, the value will be used (or its default)

    </help>
    <citations>
    </citations>

</tool>