diff architecture.xml @ 0:40c86e14b674 draft

Uploaded first version of tagdust

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/architecture.xml	Mon May 09 04:08:01 2016 -0400
@@ -0,0 +1,42 @@
+<tool id="tagdust_architecture" name="Tagdust Architecture viewer" version="0.2">
+    <description>Displays a tagdust Architecture file</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements"></expand>
+    <expand macro="stdio"></expand>
+    <expand macro="version_command"></expand>
+    <command >
+        cp $architecture.fields.path architecture.txt ;
+    </command>
+    <inputs>
+        <expand macro="architecture"></expand>
+    </inputs>
+    <outputs>
+        <data format="txt" name="architecturefile" label="The tagdust architecture." from_work_dir="architecture.txt"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="architecture" value="test_F:NNNNNNNN_S:TATAGGG_R:N" /> 
+            <output name="architecturefile" file="../tool-data/F:NNNNNNNN_S:TATAGGG_R:N.txt"/>
+        </test>
+        <test>
+            <param name="architecture" value="test_B:GTA_AAC_R:N" /> 
+            <output name="architecturefile" file="../tool-data/B:GTA,AAC_R:N.txt"/>
+        </test>
+       <test>
+            <param name="architecture" value="test_R:N" /> 
+            <output name="architecturefile" file="../tool-data/R:N.txt"/>
+        </test>
+    </tests>
+     <help>
+<![CDATA[
+This tools simply prints out the selected architecture without running tagdust.
+
+Note both the single end and paired end tagdust tools will report the architecture to standard out. 
+
+]]>    
+@tagdust-documentation@
+     </help>
+     <expand macro="citations"></expand>
+</tool>