annotate architecture.xml @ 0:40c86e14b674 draft

Uploaded first version of tagdust

<tool id="tagdust_architecture" name="Tagdust Architecture viewer" version="0.2">
    <description>Displays a tagdust Architecture file</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"></expand>
    <expand macro="stdio"></expand>
    <expand macro="version_command"></expand>
    <command >
        cp $architecture.fields.path architecture.txt ;
    </command>
    <inputs>
        <expand macro="architecture"></expand>
    </inputs>
    <outputs>
        <data format="txt" name="architecturefile" label="The tagdust architecture." from_work_dir="architecture.txt"/>
    </outputs>
    <tests>
        <test>
            <param name="architecture" value="test_F:NNNNNNNN_S:TATAGGG_R:N" /> 
            <output name="architecturefile" file="../tool-data/F:NNNNNNNN_S:TATAGGG_R:N.txt"/>
        </test>
        <test>
            <param name="architecture" value="test_B:GTA_AAC_R:N" /> 
            <output name="architecturefile" file="../tool-data/B:GTA,AAC_R:N.txt"/>
        </test>
       <test>
            <param name="architecture" value="test_R:N" /> 
            <output name="architecturefile" file="../tool-data/R:N.txt"/>
        </test>
    </tests>
     <help>
<![CDATA[
This tools simply prints out the selected architecture without running tagdust.

Note both the single end and paired end tagdust tools will report the architecture to standard out. 

]]>    
@tagdust-documentation@
     </help>
     <expand macro="citations"></expand>
</tool>