Mercurial > repos > brenninc > tagdust_2_31
diff architecture.xml @ 0:40c86e14b674 draft
Uploaded first version of tagdust
author | brenninc |
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date | Mon, 09 May 2016 04:08:01 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/architecture.xml Mon May 09 04:08:01 2016 -0400 @@ -0,0 +1,42 @@ +<tool id="tagdust_architecture" name="Tagdust Architecture viewer" version="0.2"> + <description>Displays a tagdust Architecture file</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"></expand> + <expand macro="stdio"></expand> + <expand macro="version_command"></expand> + <command > + cp $architecture.fields.path architecture.txt ; + </command> + <inputs> + <expand macro="architecture"></expand> + </inputs> + <outputs> + <data format="txt" name="architecturefile" label="The tagdust architecture." from_work_dir="architecture.txt"/> + </outputs> + <tests> + <test> + <param name="architecture" value="test_F:NNNNNNNN_S:TATAGGG_R:N" /> + <output name="architecturefile" file="../tool-data/F:NNNNNNNN_S:TATAGGG_R:N.txt"/> + </test> + <test> + <param name="architecture" value="test_B:GTA_AAC_R:N" /> + <output name="architecturefile" file="../tool-data/B:GTA,AAC_R:N.txt"/> + </test> + <test> + <param name="architecture" value="test_R:N" /> + <output name="architecturefile" file="../tool-data/R:N.txt"/> + </test> + </tests> + <help> +<![CDATA[ +This tools simply prints out the selected architecture without running tagdust. + +Note both the single end and paired end tagdust tools will report the architecture to standard out. + +]]> +@tagdust-documentation@ + </help> + <expand macro="citations"></expand> +</tool>