Mercurial > repos > brigidar > snp_to_bed
comparison snp_to_bed.xml @ 2:8220dba15923 draft default tip
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| author | brigidar |
|---|---|
| date | Mon, 28 Dec 2015 12:51:23 -0500 |
| parents | c5195904b225 |
| children |
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| 1:c5195904b225 | 2:8220dba15923 |
|---|---|
| 1 <tool id="snp_to_bed" name="snp location to bed format" version="0.3"> | 1 <tool id="snp_to_bed" name="snp location to bed format" version="0.3"> |
| 2 <description>convert SNP to interval</description> | 2 <description>convert SNP to interval</description> |
| 3 <command> | 3 <command> |
| 4 cat $input1 | sed '1d'| awk -F "\t" -v OFS="\t" '{print $1, $2-1, $2}'>> $out_file1 </command> | 4 cat $input1| awk -F "\t" -v OFS="\t" '{print $1, $2-1, $2}'>> $out_file1 </command> |
| 5 <inputs> | 5 <inputs> |
| 6 <param name="input1" type="data" label="input file"/> | 6 <param name="input1" type="data" label="input file"/> |
| 7 </inputs> | 7 </inputs> |
| 8 <outputs> | 8 <outputs> |
| 9 <data name="out_file1" format="bed" metadata_source="input1"/> | 9 <data name="out_file1" format="bed" metadata_source="input1"/> |