Mercurial > repos > brigidar > snp_to_bed

diff snp_to_bed.xml @ 2:8220dba15923 draft default tip

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drop of first row removed
author brigidar
date Mon, 28 Dec 2015 12:51:23 -0500
parents c5195904b225
children
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--- a/snp_to_bed.xml	Mon Nov 09 14:56:21 2015 -0500
+++ b/snp_to_bed.xml	Mon Dec 28 12:51:23 2015 -0500
@@ -1,7 +1,7 @@
 <tool id="snp_to_bed" name="snp location to bed format" version="0.3">
     <description>convert SNP to interval</description>
     <command>
-        cat $input1 | sed '1d'| awk -F "\t" -v OFS="\t" '{print $1, $2-1, $2}'>> $out_file1  </command>
+        cat $input1| awk -F "\t" -v OFS="\t" '{print $1, $2-1, $2}'>> $out_file1  </command>
     <inputs>
         <param name="input1" type="data" label="input file"/>
     </inputs>