Mercurial > repos > brigidar > vcf_to_snp
changeset 5:d5725351bf22 draft
update output file
author | brigidar |
---|---|
date | Mon, 02 Nov 2015 19:42:54 -0500 |
parents | 866cd9ce1cbd |
children | 3a352cb57117 |
files | vcf_to_snp.xml |
diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/vcf_to_snp.xml Mon Nov 02 19:42:35 2015 -0500 +++ b/vcf_to_snp.xml Mon Nov 02 19:42:54 2015 -0500 @@ -1,4 +1,4 @@ -<tool id="vcf_snp" name="vcf to snp" version="0.2"> +<tool id="vcf_snp" name="vcf to snp" version="0.3"> <description>vcf to snp for fasta</description> <requirements> <!-- Should just use the filter snp that's installed in the path --> @@ -9,7 +9,7 @@ ## Lines starting hash hash are comments. Galaxy will turn newlines into spaces ## ! We only have a simple single command here. - <command interpreter="python"> + <command interpreter="/usr/local/anaconda/bin/python"> vcf_snp.py -s ${vcf} -o output.txt @@ -22,7 +22,7 @@ </inputs> <outputs> - <data format="tabular" name="output_file" label="${vcf}" from_work_dir="tab.txt"> + <data format="tabular" name="output_file" label="${vcf}" from_work_dir="output.txt"> </data> </outputs>