Mercurial > repos > brigidar > vcf_to_snp

changeset 5:d5725351bf22 draft

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update output file
author brigidar
date Mon, 02 Nov 2015 19:42:54 -0500
parents 866cd9ce1cbd
children 3a352cb57117
files vcf_to_snp.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/vcf_to_snp.xml	Mon Nov 02 19:42:35 2015 -0500
+++ b/vcf_to_snp.xml	Mon Nov 02 19:42:54 2015 -0500
@@ -1,4 +1,4 @@
-<tool id="vcf_snp" name="vcf to snp" version="0.2">
+<tool id="vcf_snp" name="vcf to snp" version="0.3">
     <description>vcf to snp for fasta</description>
     <requirements>
        <!-- Should just use the filter snp that's installed in the path -->
@@ -9,7 +9,7 @@
 ## Lines starting hash hash are comments. Galaxy will turn newlines into spaces
 ## ! We only have a simple single command here.
 
-    <command interpreter="python">
+    <command interpreter="/usr/local/anaconda/bin/python">
         vcf_snp.py
         -s ${vcf}
         -o output.txt
@@ -22,7 +22,7 @@
     </inputs>
 
     <outputs>
-        <data format="tabular" name="output_file" label="${vcf}" from_work_dir="tab.txt">
+        <data format="tabular" name="output_file" label="${vcf}" from_work_dir="output.txt">
             </data>
     </outputs>