annotate data_managers/data_manager_conf.xml @ 1:f96cbb663aa9 draft

planemo upload for repository https://github.com/arpcard/rgi commit 09a75bd2d655c05892acf7585a7ed08548f1c86d

<?xml version="1.0"?>
<data_managers>
    <data_manager tool_file="data_manager_rgi_build_db/data_manager/rgi_database_builder.xml" id="rgi_database_builder" version="1.0.0">
        <!-- Defines a Data Table to be modified -->
        <data_table name="rgi_databases">
            <!-- Handle the output of the Data Manager Tool -->
            <output>
                <!-- Columns that will be specified by the Data Manager Tool -->
                <column name="value" /> 
                <column name="name" />
                <!-- The value of this column will be modified based upon data in "out_file" -->
                <column name="path" output_ref="out_file" >
                    <!-- Moving a file from the extra files path of "out_file" -->
                    <move type="directory" relativize_symlinks="True">
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">rgi_databases/${value}/${path}</target>
                    </move>
                    <!-- Store this value in the final Data Table -->
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/rgi_databases/${value}/${path}</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
    </data_manager>
</data_managers>