view test-data/broken.pdb @ 0:24bf162ef74b draft default tip

"planemo upload for repository https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/openmm commit 78cfada16486c61f1de167ed358f8a52fcbe9f70"
author chemteam
date Wed, 13 Apr 2022 16:21:56 +0000
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COMPND    /data/dnb05/galaxy_db/files/a/e/1/dataset_ae125e29-1e3c-4170-98b3-b4bfa9ea44ab.dat 
AUTHOR    GENERATED BY OPEN BABEL 3.1.0
ATOM      1  N   MET A   1      -1.471  35.518  -6.691  1.00  0.00           N  
ATOM      2  CA  MET A   1      -1.910  34.141  -6.485  1.00  0.00           C  
ATOM      3  C   MET A   1      -2.164  33.409  -7.811  1.00  0.00           C  
ATOM      4  O   MET A   1      -3.080  33.757  -8.560  1.00  0.00           O  
ATOM      5  CB  MET A   1      -3.164  34.104  -5.599  1.00  0.00           C  
ATOM      6  CG  MET A   1      -3.723  32.707  -5.358  1.00  0.00           C  
ATOM      7  SD  MET A   1      -5.149  32.703  -4.256  1.00  0.00           S  
ATOM      8  CE  MET A   1      -5.972  34.205  -4.783  1.00  0.00           C  
ATOM      9  N   LEU A   2      -1.342  32.398  -8.090  1.00  0.00           N  
ATOM     10  CA  LEU A   2      -1.526  31.550  -9.263  1.00  0.00           C  
ATOM     11  C   LEU A   2      -2.804  30.743  -9.107  1.00  0.00           C  
ATOM     12  O   LEU A   2      -2.963  30.014  -8.134  1.00  0.00           O  
ATOM     13  CB  LEU A   2      -0.324  30.624  -9.448  1.00  0.00           C  
ATOM     14  CG  LEU A   2       1.001  31.349  -9.723  1.00  0.00           C  
ATOM     15  CD1 LEU A   2       2.173  30.375  -9.719  1.00  0.00           C  
ATOM     16  CD2 LEU A   2       0.952  32.131 -11.039  1.00  0.00           C  
ATOM     17  N   ASP A   3      -3.717  30.888 -10.062  1.00  0.00           N  
ATOM     18  CA  ASP A   3      -5.063  30.335  -9.928  1.00  0.00           C  
ATOM     19  C   ASP A   3      -5.073  28.812  -9.891  1.00  0.00           C  
ATOM     20  O   ASP A   3      -4.491  28.155 -10.748  1.00  0.00           O  
ATOM     21  CB  ASP A   3      -5.977  30.843 -11.046  1.00  0.00           C  
ATOM     22  CG  ASP A   3      -7.366  30.238 -10.982  1.00  0.00           C  
ATOM     23  OD1 ASP A   3      -8.026  30.358  -9.929  1.00  0.00           O  
ATOM     24  OD2 ASP A   3      -7.805  29.641 -11.988  1.00  0.00           O  
ATOM     25  N   ALA A   4      -5.745  28.263  -8.886  1.00  0.00           N  
ATOM     26  CA  ALA A   4      -5.828  26.821  -8.702  1.00  0.00           C  
ATOM     27  C   ALA A   4      -5.989  26.064 -10.024  1.00  0.00           C  
ATOM     28  O   ALA A   4      -5.329  25.051 -10.250  1.00  0.00           O  
ATOM     29  CB  ALA A   4      -6.966  26.483  -7.755  1.00  0.00           C  
ATOM     30  N   GLU A   5      -6.859  26.566 -10.895  1.00  0.00           N  
ATOM     31  CA  GLU A   5      -7.238  25.852 -12.112  1.00  0.00           C  
ATOM     32  C   GLU A   5      -6.055  25.641 -13.052  1.00  0.00           C  
ATOM     33  O   GLU A   5      -6.076  24.755 -13.902  1.00  0.00           O  
ATOM     34  CB  GLU A   5      -8.361  26.594 -12.840  1.00  0.00           C  
ATOM     35  CG  GLU A   5      -9.491  25.689 -13.296  1.00  0.00           C  
ATOM     36  CD  GLU A   5     -10.466  25.372 -12.172  1.00  0.00           C  
ATOM     37  OE1 GLU A   5     -10.799  26.295 -11.396  1.00  0.00           O  
ATOM     38  OE2 GLU A   5     -10.905  24.205 -12.067  1.00  0.00           O  
ATOM     39  N   ARG A   6      -5.023  26.457 -12.887  1.00  0.00           N  
ATOM     40  CA  ARG A   6      -3.821  26.365 -13.708  1.00  0.00           C  
ATOM     41  C   ARG A   6      -2.815  25.349 -13.160  1.00  0.00           C  
ATOM     42  O   ARG A   6      -1.684  25.263 -13.639  1.00  0.00           O  
ATOM     43  CB  ARG A   6      -3.150  27.737 -13.778  1.00  0.00           C  
ATOM     44  CG  ARG A   6      -3.941  28.787 -14.536  1.00  0.00           C  
ATOM     45  CD  ARG A   6      -3.495  28.859 -15.983  1.00  0.00           C  
ATOM     46  NE  ARG A   6      -4.209  29.895 -16.722  1.00  0.00           N  
ATOM     47  CZ  ARG A   6      -3.682  30.592 -17.723  1.00  0.00           C  
ATOM     48  NH1 ARG A   6      -2.424  30.376 -18.098  1.00  0.00           N  
ATOM     49  NH2 ARG A   6      -4.407  31.513 -18.342  1.00  0.00           N  
ATOM     50  N   LEU A   7      -3.216  24.583 -12.152  1.00  0.00           N  
ATOM     51  CA  LEU A   7      -2.263  23.726 -11.457  1.00  0.00           C  
ATOM     52  C   LEU A   7      -2.667  22.264 -11.491  1.00  0.00           C  
ATOM     53  O   LEU A   7      -1.975  21.419 -10.930  1.00  0.00           O  
ATOM     54  CB  LEU A   7      -2.102  24.177  -9.997  1.00  0.00           C  
ATOM     55  CG  LEU A   7      -1.945  25.680  -9.749  1.00  0.00           C  
ATOM     56  CD1 LEU A   7      -2.124  26.012  -8.270  1.00  0.00           C  
ATOM     57  CD2 LEU A   7      -0.611  26.185 -10.257  1.00  0.00           C  
ATOM     58  N   LYS A   8      -3.791  21.963 -12.132  1.00  0.00           N  
ATOM     59  CA  LYS A   8      -4.302  20.595 -12.151  1.00  0.00           C  
ATOM     60  C   LYS A   8      -3.234  19.587 -12.586  1.00  0.00           C  
ATOM     61  O   LYS A   8      -3.277  18.417 -12.186  1.00  0.00           O  
ATOM     62  CB  LYS A   8      -5.543  20.491 -13.049  1.00  0.00           C  
ATOM     63  N   HIS A   9      -2.276  20.055 -13.390  1.00  0.00           N  
ATOM     64  CA  HIS A   9      -1.222  19.210 -13.959  1.00  0.00           C  
ATOM     65  C   HIS A   9      -0.085  18.862 -12.995  1.00  0.00           C  
ATOM     66  O   HIS A   9       0.712  17.970 -13.281  1.00  0.00           O  
ATOM     67  CB  HIS A   9      -0.609  19.900 -15.181  1.00  0.00           C  
ATOM     68  CG  HIS A   9       0.182  21.125 -14.839  1.00  0.00           C  
ATOM     69  ND1 HIS A   9      -0.411  22.328 -14.524  1.00  0.00           N  
ATOM     70  CD2 HIS A   9       1.516  21.327 -14.740  1.00  0.00           C  
ATOM     71  CE1 HIS A   9       0.522  23.224 -14.256  1.00  0.00           C  
ATOM     72  NE2 HIS A   9       1.702  22.642 -14.381  1.00  0.00           N  
CONECT    1    2                                                      
CONECT    2    3    1    5                                            
CONECT    3    4    4    9    2                                       
CONECT    4    3    3                                                 
CONECT    5    2    6                                                 
CONECT    6    5    7                                                 
CONECT    7    6    8                                                 
CONECT    8    7                                                      
CONECT    9   10    3                                                 
CONECT   10   13   11    9                                            
CONECT   11   17   10   12   12                                       
CONECT   12   11   11                                                 
CONECT   13   14   10                                                 
CONECT   14   16   15   13                                            
CONECT   15   14                                                      
CONECT   16   14                                                      
CONECT   17   18   11                                                 
CONECT   18   21   17   19                                            
CONECT   19   20   20   18   25                                       
CONECT   20   19   19                                                 
CONECT   21   22   18                                                 
CONECT   22   24   24   21   23                                       
CONECT   23   22                                                      
CONECT   24   22   22                                                 
CONECT   25   19   26                                                 
CONECT   26   27   25   29                                            
CONECT   27   30   28   28   26                                       
CONECT   28   27   27                                                 
CONECT   29   26                                                      
CONECT   30   31   27                                                 
CONECT   31   32   34   30                                            
CONECT   32   33   33   39   31                                       
CONECT   33   32   32                                                 
CONECT   34   35   31                                                 
CONECT   35   34   36                                                 
CONECT   36   35   38   38   37                                       
CONECT   37   36                                                      
CONECT   38   36   36                                                 
CONECT   39   40   32                                                 
CONECT   40   43   41   39                                            
CONECT   41   40   42   42   50                                       
CONECT   42   41   41                                                 
CONECT   43   44   40                                                 
CONECT   44   45   43                                                 
CONECT   45   46   44                                                 
CONECT   46   47   47   45                                            
CONECT   47   49   48   46   46                                       
CONECT   48   47                                                      
CONECT   49   47                                                      
CONECT   50   41   51                                                 
CONECT   51   50   52   54                                            
CONECT   52   58   51   53   53                                       
CONECT   53   52   52                                                 
CONECT   54   51   55                                                 
CONECT   55   57   54   56                                            
CONECT   56   55                                                      
CONECT   57   55                                                      
CONECT   58   59   52                                                 
CONECT   59   62   60   58                                            
CONECT   60   63   61   61   59                                       
CONECT   61   60   60                                                 
CONECT   62   59                                                      
CONECT   63   64   60                                                 
CONECT   64   67   63   65                                            
CONECT   65   64   66   66                                            
CONECT   66   65   65                                                 
CONECT   67   68   64                                                 
CONECT   68   67   70   70   69                                       
CONECT   69   68   71                                                 
CONECT   70   68   68   72                                            
CONECT   71   69   72   72                                            
CONECT   72   70   71   71                                            
MASTER        0    0    0    0    0    0    0    0   72    0   72    0
END