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diff test-data/clono_compute_def1_BCR_input1.csv @ 1:acaa8e8a0b88 draft default tip

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Uploaded test-data & added tool help
author chmaramis
date Mon, 30 Apr 2018 04:47:52 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/clono_compute_def1_BCR_input1.csv	Mon Apr 30 04:47:52 2018 -0400
@@ -0,0 +1,21 @@
+	Sequence ID	Functionality	V-GENE	V-REGION score	V-REGION identity %	V-REGION identity nt	V-REGION identity % (with ins/del events)	V-REGION identity nt (with ins/del events)	J-GENE	J-REGION score	J-REGION identity %	J-REGION identity nt	D-GENE	D-REGION reading frame	CDR1-IMGT length	CDR2-IMGT length	CDR3-IMGT length	CDR-IMGT lengths	FR-IMGT lengths	AA JUNCTION	JUNCTION frame	Orientation	Functionality comment	V-REGION potential ins/del	J-GENE and allele comment	V-REGION insertions	V-REGION deletions	Sequence
+1	lcl|FLN1FA001B9SVM.1|	productive	IGHV1-69 or IGHV1-69D	790	100	159/159 nt			IGHJ4	186	87.5	42/48 nt	IGHD2-15	2	X	8	16	X.8.16	[X.7.38.11]	CYLGYCSGGSCYPQVGYW	in-frame	+						gggcttgagtggatgggagggatcatccctatctttggtacagcaaactacgcacagaagttccagggcagagtcacgattaccgcggacgaatccacgagcacagcctacatggagctgagcagcctgagatctgaggacacggccgtgtattactgttatttaggatattgtagtggtggtagctgctaccctcaggttggctactggggccagggaaccctggtcaccgtctcctcag
+2	lcl|FLN1FA001CUVDF.1|	productive	IGHV3-30 or IGHV3-30-3	786	99.38	159/160 nt			IGHJ4	231	97.92	47/48 nt	IGHD2-15	2	X	8	13	X.8.13	[X.7.38.11]	CVTYCSGGSCYFDYW	in-frame	+						ggggctggagtgggtggcagttatatcatatgatggaagtaataaatactacgtagactccgtgaagggccgattcaccatctccagagacaattccaagaacacgctgtatctgcaaatgaacagcctgagagctgaggacacggctgtgtattactgtgttacatattgtagtggtggtagctgctactttgactactggggccagggaaccctggtcaccgtctcctcag
+3	lcl|FLN1FA001DLPHD.1|	productive	IGHV1-3	775	100	156/156 nt			IGHJ4	186	87.5	42/48 nt	IGHD3-16	2	X	8	9	X.8.9	[X.6.38.11]	CYISGSYVGYW	in-frame	+						cttgagtggatgggatggatcaacgctggcaatggtaacacaaaatattcacagaagttccagggcagagtcaccattaccagggacacatccgcgagcacagcctacatggagctgagcagcctgagatctgaagacacggctgtgtattactgttacatttcggggagttatgtaggctactggggccagggaaccctggtcaccgtctcctcag
+4	lcl|FLN1FA002QTWMQ.1|	productive	IGHV4-39	775	100	156/156 nt			IGHJ4	195	89.58	43/48 nt	IGHD3-10	3	X	7	11	X.7.11	[X.7.38.11]	CYSAVVRGRFDYW	in-frame	+						gggctggagtggattgggagtatctattatagtgggagcacctactacaacccgtccctcaagagtcgagtcaccatatccgtagacacgtccaagaaccagttctccctgaagctgagctctgtgaccgccgcagacacggctgtgtattactgttatagcgcggtggtacggggaagatttgactactggggccagggaaccctggtcaccgtctcctcag
+5	lcl|FLN1FA002Q975Z.1|	productive	IGHV3-53	771	99.36	156/157 nt			IGHJ4	168	83.33	40/48 nt	IGHD2-21	3	X	7	10	X.7.10	[X.7.38.11]	CVVVTATPHGYW	in-frame	+						ggggctggagtgggtctcagttatttatagcggtggtagcacatactacgcagactccgtgaagggccgattcaccatctccagagacaattccaaggacacgctgtatcttcaaatgaacagcctgagagccgaggacacggccgtgtattactgtgtggtggtgactgctactccccatgggtactggggccagggaaccctggtcaccgtctcctcag
+6	lcl|FLN1FA001AX4MF.1|	productive	IGHV4-39	770	100	155/155 nt			IGHJ4	222	95.83	46/48 nt	IGHD3-22	2	X	7	15	X.7.15	[X.6.38.11]	CVVNYYDSSGYYYIDYW	in-frame	+						ggctggagtggattgggagtatctattatagtgggagcacctactacaacccgtccctcaagagtcgagtcaccatatccgtagacacgtccaagaaccagttctccctgaagctgagctctgtgaccgccgcagacacggctgtgtattactgtgtggtaaattactatgatagtagtggttattactacatagactactggggccagggaaccctggtcaccgtctcctcag
+7	lcl|FLN1FA0074PUDE.1|	productive	IGHV4-39	770	100	155/155 nt			IGHJ4	222	95.83	46/48 nt	IGHD3-22	2	X	7	15	X.7.15	[X.6.38.11]	CVVNYYDSSGYYYIDYW	in-frame	+						ggctggagtggattgggagtatctattatagtgggagcacctactacaacccgtccctcaagagtcgagtcaccatatccgtagacacgtccaagaaccagttctccctgaagctgagctctgtgaccgccgcagacacggctgtgtattactgtgtggtaaattactatgatagtagtggttattactacatagactactggggccagggaaccctggtcaccgtctcctcag
+8	lcl|FLN1FA0013V4SA.1|	productive	IGHV1-3	790	100	159/159 nt			IGHJ4	186	87.5	42/48 nt	IGHD2-15	2	X	8	16	X.8.16	[X.7.38.11]	CYLGYCSGGSCYPQVGYW	in-frame	+						aggcttgagtggatgggatggatcaacgctggcaatggtaacacaaaatattcacagaagttccagggcagagtcaccattaccagggacacatccgcgagcacagcctacatggagctgagcagcctgagatctgaagacacggctgtgtattactgttatttaggatattgtagtggtggtagctgctaccctcaggttggctactggggccagggaaccctggtcaccgtctcctcag
+9	lcl|FLN1FA00056KW6.1|	productive	IGHV1-3	775	100	156/156 nt			IGHJ4	186	87.5	42/48 nt	IGHD3-16	2	X	8	9	X.8.9	[X.6.38.11]	CYISGSYVGYW	in-frame	+						cttgagtggatgggatggatcaacgctggcaatggtaacacaaaatattcacagaagttccagggcagagtcaccattaccagggacacatccgcgagcacagcctacatggagctgagcagcctgagatctgaagacacggctgtgtattactgttacatttcggggagttatgtaggctactggggccagggaaccctggtcaccgtctcctcag
+10	lcl|FLN1FA006WKNJR.1|	productive	IGHV3-53	771	99.36	156/157 nt			IGHJ4	168	83.33	40/48 nt	IGHD2-21	3	X	7	10	X.7.10	[X.7.38.11]	CVVVTATPHGYW	in-frame	+						ggggctggagtgggtctcagttatttatagcggtggtagcacatactacgcagactccgtgaagggccgattcaccatctccagagacaattccaaggacacgctgtatcttcaaatgaacagcctgagagccgaggacacggccgtgtattactgtgtggtggtgactgctactccccatgggtactggggccagggaaccctggtcaccgtctcctcag
+11	lcl|FLN1FA008ANOPH.1|	productive	IGHV4-39	775	100	156/156 nt			IGHJ4	195	89.58	43/48 nt	IGHD3-10	3	X	7	11	X.7.11	[X.7.38.11]	CYSAVVRGRFDYW	in-frame	+						gggctggagtggattgggagtatctattatagtgggagcacctactacaacccgtccctcaagagtcgagtcaccatatccgtagacacgtccaagaaccagttctccctgaagctgagctctgtgaccgccgcagacacggctgtgtattactgttatagcgcggtggtacggggaagatttgactactggggccagggaaccctggtcaccgtctcctcag
+12	lcl|FLN1FA005T7JJ8.1|	productive	IGHV3-33	795	100	160/160 nt			IGHJ4	222	95.83	46/48 nt	IGHD3-22	2	X	8	15	X.8.15	[X.7.38.11]	CVTYYYDSSGYPYFDYW	in-frame	+						ggggctggagtgggtggcagttatatggtatgatggaagtaataaatactatgcagactccgtgaagggccgattcaccatctccagagacaattccaagaacacgctgtatctgcaaatgaacagcctgagagccgaggacacggctgtgtattactgtgtaacgtattactatgatagtagtggttatccttactttgactactggggccagggaaccctggtcaccgtctcctcag
+13	lcl|FLN1FA0018WER7.1|	productive	IGHV4-39	770	100	155/155 nt			IGHJ4	222	95.83	46/48 nt	IGHD3-22	2	X	7	15	X.7.15	[X.6.38.11]	CVVNYYDSSGYYYIDYW	in-frame	+						ggctggagtggattgggagtatctattatagtgggagcacctactacaacccgtccctcaagagtcgagtcaccatatccgtagacacgtccaagaaccagttctccctgaagctgagctctgtgaccgccgcagacacggctgtgtattactgtgtggtaaattactatgatagtagtggttattactacatagactactggggccagggaaccctggtcaccgtctcctcag
+14	lcl|FLN1FA004BRKX9.1|	productive	IGHV1-3	775	100	156/156 nt			IGHJ4	186	87.5	42/48 nt	IGHD3-16	2	X	8	9	X.8.9	[X.6.38.11]	CYISGSYVGYW	in-frame	+						cttgagtggatgggatggatcaacgctggcaatggtaacacaaaatattcacagaagttccagggcagagtcaccattaccagggacacatccgcgagcacagcctacatggagctgagcagcctgagatctgaagacacggctgtgtattactgttacatttcggggagttatgtaggctactggggccagggaaccctggtcaccgtctcctcag
+15	lcl|FLN1FA00826HO1.1|	productive	IGHV4-39	775	100	156/156 nt			IGHJ4	195	89.58	43/48 nt	IGHD3-10	3	X	7	11	X.7.11	[X.7.38.11]	CYSAVVRGRFDYW	in-frame	+						gggctggagtggattgggagtatctattatagtgggagcacctactacaacccgtccctcaagagtcgagtcaccatatccgtagacacgtccaagaaccagttctccctgaagctgagctctgtgaccgccgcagacacggctgtgtattactgttatagcgcggtggtacggggaagatttgactactggggccagggaaccctggtcaccgtctcctcag
+16	lcl|FLN1FA0041SQ1V.1|	productive	IGHV3-53	771	99.36	156/157 nt			IGHJ4	168	83.33	40/48 nt	IGHD2-21	3	X	7	10	X.7.10	[X.7.38.11]	CVVVTATPHGYW	in-frame	+						ggggctggagtgggtctcagttatttatagcggtggtagcacatactacgcagactccgtgaagggccgattcaccatctccagagacaattccaaggacacgctgtatcttcaaatgaacagcctgagagccgaggacacggccgtgtattactgtgtggtggtgactgctactccccatgggtactggggccagggaaccctggtcaccgtctcctcag
+17	lcl|FLN1FA000BBO91.1|	productive	IGHV3-33	795	100	160/160 nt			IGHJ4	222	95.83	46/48 nt	IGHD3-22	2	X	8	15	X.8.15	[X.7.38.11]	CVTYYYDSSGYPYFDYW	in-frame	+						ggggctggagtgggtggcagttatatggtatgatggaagtaataaatactatgcagactccgtgaagggccgattcaccatctccagagacaattccaagaacacgctgtatctgcaaatgaacagcctgagagccgaggacacggctgtgtattactgtgtaacgtattactatgatagtagtggttatccttactttgactactggggccagggaaccctggtcaccgtctcctcag
+18	lcl|FLN1FA008W37HH.1|	productive	IGHV4-39	775	100	156/156 nt			IGHJ4	195	89.58	43/48 nt	IGHD3-10	3	X	7	11	X.7.11	[X.7.38.11]	CYSAVVRGRFDYW	in-frame	+						gggctggagtggattgggagtatctattatagtgggagcacctactacaacccgtccctcaagagtcgagtcaccatatccgtagacacgtccaagaaccagttctccctgaagctgagctctgtgaccgccgcagacacggctgtgtattactgttatagcgcggtggtacggggaagatttgactactggggccagggaaccctggtcaccgtctcctcag
+19	lcl|FLN1FA0080EWJB.1|	productive	IGHV1-3	775	100	156/156 nt			IGHJ4	186	87.5	42/48 nt	IGHD3-16	2	X	8	9	X.8.9	[X.6.38.11]	CYISGSYVGYW	in-frame	+						cttgagtggatgggatggatcaacgctggcaatggtaacacaaaatattcacagaagttccagggcagagtcaccattaccagggacacatccgcgagcacagcctacatggagctgagcagcctgagatctgaagacacggctgtgtattactgttacatttcggggagttatgtaggctactggggccagggaaccctggtcaccgtctcctcag
+20	lcl|FLN1FA003C09AP.1|	productive	IGHV1-3	790	100	159/159 nt			IGHJ4	186	87.5	42/48 nt	IGHD2-15	2	X	8	16	X.8.16	[X.7.38.11]	CYLGYCSGGSCYPQVGYW	in-frame	+						aggcttgagtggatgggatggatcaacgctggcaatggtaacacaaaatattcacagaagttccagggcagagtcaccattaccagggacacatccgcgagcacagcctacatggagctgagcagcctgagatctgaagacacggctgtgtattactgttatttaggatattgtagtggtggtagctgctaccctcaggttggctactggggccagggaaccctggtcaccgtctcctcag